PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g05650

Common Name

GSCOC_T00039843001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 349aa MW: 36816 Da PI: 8.5451

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g05650	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2e-39	72	130	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCdstntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ Cc07_g05650 72 PENLRCPRCDSTNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKST 130 57899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	68	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.9E-33	74	129	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.553	75	129	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	77	113	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MIQELLGEAA SGVLTGGERS KLPVDNGVSG ASSASPSLSP SPTPSPSPSP SPSPSPSSSA 60 VTLPPPTGSS TPENLRCPRC DSTNTKFCYY NNYNLTQPRH FCKTCRRYWT KGGALRNVPI 120 GGGCRKNKST MITSSVIKSS AGKFKTMATE IGKSSFLSAF EHELSSSSPS SNPILWASPQ 180 NSHLFSLLKA NQSPNPNASP MCNSVVSTSM KKEEAAMPAG CYSLNACSRM VGFDSELGQQ 240 VPSVGLISSS SGWRNSEQHQ QQQQIGFVLG QGEFTGVQDF YQRLRSSRNC TYPDHAPVVL 300 GNIVSSSSSS SSSIQVLDSA PVAVAESGYW NSILSSWSDM PTTNGAYP*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MIQELLGEAA SGVLTGGERS KLPVDNGVSG ASSASPSLSP SPTPSPSPSP SPSPSPSSSA  60
VTLPPPTGSS TPENLRCPRC DSTNTKFCYY NNYNLTQPRH FCKTCRRYWT KGGALRNVPI  120
GGGCRKNKST MITSSVIKSS AGKFKTMATE IGKSSFLSAF EHELSSSSPS SNPILWASPQ  180
NSHLFSLLKA NQSPNPNASP MCNSVVSTSM KKEEAAMPAG CYSLNACSRM VGFDSELGQQ  240
VPSVGLISSS SGWRNSEQHQ QQQQIGFVLG QGEFTGVQDF YQRLRSSRNC TYPDHAPVVL  300
GNIVSSSSSS SSSIQVLDSA PVAVAESGYW NSILSSWSDM PTTNGAYP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027153972.1	0.0	dof zinc finger protein DOF5.7-like
TrEMBL	A0A068U1N5	0.0	A0A068U1N5_COFCA; Uncharacterized protein
STRING	XP_002522340.1	4e-99	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-33	TARGET OF MONOPTEROS 6