PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g05280
Common NameGSCOC_T00039795001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 379aa    MW: 41517.4 Da    PI: 8.1417
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g05280genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.71.1e-091391761954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Cc07_g05280 139 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 176
                  665559******************************88 PP
2BELL95.74.1e-3117711872
         BELL 18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                 +Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+
  Cc07_g05280 17 QVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIATQL 71
                 7***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-9169IPR006563POX domain
PfamPF075264.6E-271768IPR006563POX domain
PROSITE profilePS5007112.568117180IPR001356Homeobox domain
SMARTSM003891.2E-9120184IPR001356Homeobox domain
CDDcd000863.98E-12120181No hitNo description
SuperFamilySSF466891.28E-17121187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-29123186IPR009057Homeodomain-like
PfamPF059201.6E-18137176IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLDEAPKFRR VSRNIIQVDR RYNHYCEQMQ MVVNSFDLVM GFGAAVPYTA LAQKAMSRHF  60
RCLKDAIATQ LKHSCELLGE KDAGTSGVTK GETPRLKLLE QSLRQQRAFH QMGMMEQEAW  120
RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP  180
MVEEMYQQEA KEEAEEREPS QSNGSNIAQT PTPNATTTTT PSSTAATTTA TTATATETTA  240
AAAAAITATG KRSEINDSEN DPSFFAINRQ CFSENQAKNN CSSATSTSIM SISTSLATQT  300
ATVKPPTMSS QSFPTAYDSE AACRRSGIVT SANAEMGSTF IRFGTSAGDV SLTLGLRHAG  360
NLPENSSTTF SVRDFGGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-17126184563Homeobox protein Meis2
3k2a_B5e-17126184563Homeobox protein Meis2
4xrm_A5e-17126184563Homeobox protein Meis2
4xrm_B5e-17126184563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027078946.10.0BEL1-like homeodomain protein 2
RefseqXP_027078947.10.0BEL1-like homeodomain protein 2
SwissprotQ9SW801e-130BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A068U4840.0A0A068U484_COFCA; Uncharacterized protein
STRINGVIT_04s0023g01020.t011e-168(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33412139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-110BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]