PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g04430 | ||||||||
Common Name | GSCOC_T00039699001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29117.8 Da PI: 8.6281 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65 | 1.4e-20 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+++v ++G g+W+++a+ g++Rt+k+c++rw +yl Cc07_g04430 18 KGPWTPEEDKLLIEYVSLHGEGRWSSVAKSAGLHRTGKSCRLRWVNYL 65 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 71 | 115 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ Cc07_g04430 71 RGHLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 115 6778******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.309 | 17 | 69 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-18 | 17 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.16E-31 | 17 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.9E-20 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-25 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.23E-14 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 19.827 | 70 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-14 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 71 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-24 | 73 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.51E-10 | 75 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVVGMMGWNV HEQGWWRKGP WTPEEDKLLI EYVSLHGEGR WSSVAKSAGL HRTGKSCRLR 60 WVNYLRPGLK RGHLTPQEEG IIIELHALWG NKWSTIARYL PGRTDNEIKN YWRTHFKKKG 120 KPSEKKDRRR LLKQKMEQDE TGTGAKASPL SEVTSEQTLS PELQAQQEFP TVPLHPVMEN 180 PQLPVLYQEA DSWSDTNILM DGLSGWLWNF DDQNGKGVQA NNDCSKMAKQ NQASFAPYSF 240 GFDNVDVQNG GYIY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 18 | 119 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027073824.1 | 0.0 | transcription factor MYB59-like | ||||
TrEMBL | A0A068U3Z3 | 0.0 | A0A068U3Z3_COFCA; Uncharacterized protein | ||||
STRING | EOY03785 | 3e-88 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-69 | myb domain protein 121 |