PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g03730
Common NameGSCOC_T00039618001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 995aa    MW: 109263 Da    PI: 8.5964
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g03730genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.8e-32724780259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +DgynWrKYGqK vk +e+prsYY+Ct+++Cpvkkkver++ d++v+eitY+g+Hnhe
  Cc07_g03730 724 SDGYNWRKYGQKLVKAKEHPRSYYKCTHPSCPVKKKVERAS-DGQVTEITYKGQHNHE 780
                  7****************************************.***************7 PP
2WRKY106.51.4e-33902960159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYYrCt+agC+v+k+ver++ dpk+v++tYeg+Hnh+
  Cc07_g03730 902 LDDGYKWRKYGQKVVKGNPHPRSYYRCTFAGCNVRKHVERASADPKAVITTYEGKHNHD 960
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF508141.08E-2177170IPR011038Calycin-like
Gene3DG3DSA:2.40.128.201.7E-3079256IPR012674Calycin
PfamPF122041.1E-1683405IPR022017Domain of unknown function DUF3598
SuperFamilySSF508141.08E-21197255IPR011038Calycin-like
SuperFamilySSF508146.32E-31271410IPR011038Calycin-like
Gene3DG3DSA:2.40.128.209.6E-41272410IPR012674Calycin
Gene3DG3DSA:2.20.25.801.5E-28718782IPR003657WRKY domain
PROSITE profilePS5081124.283718782IPR003657WRKY domain
SuperFamilySSF1182904.97E-25722782IPR003657WRKY domain
SMARTSM007742.9E-34723781IPR003657WRKY domain
PfamPF031061.7E-24725780IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-37887962IPR003657WRKY domain
SuperFamilySSF1182901.83E-29894962IPR003657WRKY domain
PROSITE profilePS5081137.929897962IPR003657WRKY domain
SMARTSM007742.0E-40902961IPR003657WRKY domain
PfamPF031063.6E-26903960IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MAAAASPVSV TSSPNYRTNP SQTRKLPPQS WPPTAPTRFS QPLSSRRTSI AGAAQSMKQP  60
SSSAQPNPEV HLSLDAVQRF IHLNFGNWTG TFHQFDSQGN LMHKISTKLA AGSYGEDELI  120
SLIQTLYIKQ PPSTTSFSGI DDDEAEWSEY KIKEINMFTM DKYQQIGFFP KERAFALRYQ  180
TAGMLETVLR QGVLGEDDIG EESPKNLKLP SRQPSIVCEN CLYSLEKDRR VRAFHVMDPK  240
GILDMLLVFL EDRGSTAPIP PTFDDSQDYG DRIKAFLGTW KGHSITKRSG VYGATLARAD  300
TVAVLEINKD GQLIQDIAST LEGRDITTNV HWTGTMSKNL VTFDGGFQLI LLPGGMYMGC  360
PCDVAKCVQE SKSFHLEFCW LESPGKRQRL VRTYDVEGLA VSSTYFLESR SQFCVKVSYP  420
TCESRTTTSL SKDLQFASCS QVAKARQLGL LCGVGWVFRC HSVTSILKKS VHVKSRISKN  480
KSMGQTEMAT ETGGAAAAKG QRRPTITVPP RAPFEPLFTS GSMPGYSPGP MTLLSNIFSP  540
DSNSCSFSQL LAGAMASPIG KPTFFATAGD YSTENYAAKD VNFGVGNDKG SGYKQNRPMG  600
LVVAQSPLFL VPPALSPSGF LNSPGFLSPL QSPFGMSHQQ ALAHVTAQAA LSQSFVQIQA  660
DFQRASAIAS AEAAELKPSS LPSETLQEEV HSIPAEPQTL KMVPLEASQS DKKTVSFALD  720
KPASDGYNWR KYGQKLVKAK EHPRSYYKCT HPSCPVKKKV ERASDGQVTE ITYKGQHNHE  780
LPQPNSRAKD NSCLNGMMSS EVNPESGSRW QTEVTHDAAT SYPNNLKHKA FTQLSSEQFP  840
VASEQDERED SATVIDEDID DDDEPNAKRR STEVGAGVPA PLHKTVTEPK IVVQTRSEVD  900
LLDDGYKWRK YGQKVVKGNP HPRSYYRCTF AGCNVRKHVE RASADPKAVI TTYEGKHNHD  960
IPAGRNSGQN NVNTNTKLKP RRPVARKSSV DREV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yvf_A1e-1767241318359BFA1
5yvf_B1e-1767241318359BFA1
5yvf_C1e-1767241318359BFA1
5yvf_D1e-1767241318359BFA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027153010.10.0probable WRKY transcription factor 4
TrEMBLA0A068U3T60.0A0A068U3T6_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-128WRKY DNA-binding protein 4