PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g03670
Common NameGSCOC_T00039611001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 431aa    MW: 47377.6 Da    PI: 4.281
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g03670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-1953102255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Cc07_g03670  53 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 102
                  789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.57E-3252109No hitNo description
Gene3DG3DSA:3.30.730.102.3E-2753109IPR001471AP2/ERF domain
PROSITE profilePS5103219.55953110IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-1953110IPR016177DNA-binding domain
PfamPF008471.1E-1353102IPR001471AP2/ERF domain
SMARTSM003801.6E-3553116IPR001471AP2/ERF domain
PRINTSPR003676.5E-85465IPR001471AP2/ERF domain
PRINTSPR003676.5E-87692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MARKRKAGDC MDNEKNSSSS SSSGDEGNVA WDEMVKEAAA AAAFGGARRA RKRFVGVRQR  60
PSGRWVAEIK DTIQKIRVWL GTFDTAEEAA RAYDEAACLL RGANTRTNFW PCSSSSSATP  120
ALPSKITNLL LSKLKARNNS LAAAAAAASS VPASDHEQQR ESHEFPDDQS SDFPDAQFTD  180
FLNDPEDYTP EKDGTTTSTA SNLSTNNSSD SHLSSSPEYC LTQHDHHCEV IREPSLDLEC  240
WDDTVQSSNG HECLSWDGST AEDETEEHAE EGNNVNPGIV DFNFVDEIES CYNCSPFEIA  300
GQISQPVEIE DYGDDPSMLS EAMKRMNYER KFSASLYAFN GITECLKLRL RSVSVLQQER  360
SEQLTRLRNA CNKNIPDQEQ QETLQGDNVE LIKKQEEEAT PADAGASSSN FDGDLSLWSS  420
IDLPPICYVT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-13531091471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074475.10.0ethylene-responsive transcription factor ERN1-like
RefseqXP_027152650.10.0ethylene-responsive transcription factor ERN1-like
TrEMBLA0A068U1U40.0A0A068U1U4_COFCA; Uncharacterized protein
STRINGcassava4.1_008867m1e-135(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-17related to AP2 11