PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g03320 | ||||||||
Common Name | GSCOC_T00039559001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | NAC | ||||||||
Protein Properties | Length: 400aa MW: 44573.3 Da PI: 6.6167 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.2 | 1.3e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++ Cc07_g03320 14 MLPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKYDPWDLPKLATSGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSdGT 110 579***************************.89***************8888999***************************************9566 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lvfy+gra kg ktdW+mhe+rl Cc07_g03320 111 KCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 141 67***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-58 | 13 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.118 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-25 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MDDKGDGDKI DDVMLPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP 60 KLATSGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV 120 FYRGRAAKGI KTDWMMHEFR LPTTSESAPP KKLADKNLSL HDSWAICRIF KKTSSLAHRA 180 LSHTWIAPVC ETSPDIFPQG AQYAQYGSEN LSCTTESGST MQLYTNNDLQ SASTATFSAL 240 NIPSCKPLNG LLSKPSFLAG PNGDIPCNFM FPPSEISGPP NKCSLDVPSM LFNLSPTFLG 300 DVNKTSESIE FEGSLHHFNS FSMNPSPDMQ EGISIENDEG GLRKDPRDGD ASNQWENMRA 360 IGFPFSLPST LPDVWKPNLP WDSPNCPSEI STTFSANKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 16 | 175 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 16 | 175 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 16 | 175 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 16 | 175 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-53 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-53 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-53 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-53 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-53 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-53 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-53 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-53 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-53 | 16 | 175 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 16 | 175 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027154409.1 | 0.0 | protein FEZ-like | ||||
Swissprot | Q9ZVH0 | 1e-98 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A068U1S1 | 0.0 | A0A068U1S1_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003343 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2202 | 22 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 2e-97 | NAC family protein |
Publications ? help Back to Top | |||
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