PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g03120

Common Name

GSCOC_T00039529001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 508aa MW: 54891 Da PI: 7.336

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g03120	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.7	1.5e-30	174	232	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg+Hnh+ Cc07_g03120 174 SDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDTSILITTYEGTHNHP 232 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.3E-32	159	234	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-27	166	234	IPR003657	WRKY domain
PROSITE profile	PS50811	28.541	168	234	IPR003657	WRKY domain
SMART	SM00774	1.8E-36	173	233	IPR003657	WRKY domain
Pfam	PF03106	7.1E-27	175	232	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MSEVREENAR LKTLLEKIEM DYKSLQMRFV NICQPEANKK SDHDPPPSGN GQIEELELVS 60 LCLGRSPSDP KKNNNDSSSS FKNRKEDENL KEGLKLGLDF NCFQDCKSDA IDLSTDPSPD 120 NSALESKEEE AAGETWPPSK VLKAMRNEDD DLSQASIKRA RVSVRARCDT PTMSDGCQWR 180 KYGQKIAKGN PCPRAYYRCT VAPSCPVRKQ VQRCAEDTSI LITTYEGTHN HPLPVSATAM 240 ASATAAAASM LLSGSSSSEP GLGPAATTNL RSNLHGLNVN LSDNSKYHPY YLPNSSSSPF 300 PSITLDLTTN PSTSSAQFNM FSSTSLQSRL PSTSFSFSPS QTNVPPALWS NNNLNYGAIS 360 YNKNQMISTL SSGRTSQEHL YQPFKQKNYQ APASQQALTE TLTKAITSDP SFRSVIAAAI 420 TTMVGGGGAT PANIKVENLG KKLKWDEQMT VTSSNGCTSS FLSQSSSSAS QSVNLRKQRT 480 QPAFSVSIGA PSATPVDDID QTNSGEP*

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MSEVREENAR LKTLLEKIEM DYKSLQMRFV NICQPEANKK SDHDPPPSGN GQIEELELVS  60
LCLGRSPSDP KKNNNDSSSS FKNRKEDENL KEGLKLGLDF NCFQDCKSDA IDLSTDPSPD  120
NSALESKEEE AAGETWPPSK VLKAMRNEDD DLSQASIKRA RVSVRARCDT PTMSDGCQWR  180
KYGQKIAKGN PCPRAYYRCT VAPSCPVRKQ VQRCAEDTSI LITTYEGTHN HPLPVSATAM  240
ASATAAAASM LLSGSSSSEP GLGPAATTNL RSNLHGLNVN LSDNSKYHPY YLPNSSSSPF  300
PSITLDLTTN PSTSSAQFNM FSSTSLQSRL PSTSFSFSPS QTNVPPALWS NNNLNYGAIS  360
YNKNQMISTL SSGRTSQEHL YQPFKQKNYQ APASQQALTE TLTKAITSDP SFRSVIAAAI  420
TTMVGGGGAT PANIKVENLG KKLKWDEQMT VTSSNGCTSS FLSQSSSSAS QSVNLRKQRT  480
QPAFSVSIGA PSATPVDDID QTNSGEP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-21	160	234	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027152656.1	0.0	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-107	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A068U1Q5	0.0	A0A068U1Q5_COFCA; Uncharacterized protein
STRING	VIT_14s0108g00120.t01	1e-153	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12805	19	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-77	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]