PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g03070 | ||||||||
Common Name | GSCOC_T00039522001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 471aa MW: 53491.9 Da PI: 8.1309 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.8 | 1.5e-14 | 145 | 204 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g Cc07_g03070 145 SRFRGVSRHRWTGRFEAHLWDkLSWNIaqkKKgKQVYLGAYDDEEAAARAYDLAAIKYWG 204 789******************888855665447*************************98 PP | |||||||
2 | AP2 | 52 | 1.7e-16 | 248 | 299 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Cc07_g03070 248 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 299 89****99**********99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-11 | 145 | 204 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-16 | 145 | 213 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.599 | 146 | 212 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-15 | 146 | 212 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-24 | 146 | 218 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-5 | 147 | 158 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-12 | 248 | 299 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.06E-24 | 248 | 309 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-18 | 248 | 309 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-18 | 249 | 308 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 249 | 307 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-26 | 249 | 313 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-5 | 289 | 309 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MHPSGSKSYA FDSLGWQRVE LVTTHCLSSN LLPFVALIAC ICCLFVNRQF YSWRGSEKKE 60 KQNPSDTRRP MSTFIKSEEN PGRRRMCTAD AGAPDGRSVK RRRRDQQTAA ADAFPLACPG 120 QQMQQQQLEQ LVDLSSAPTT VKRSSRFRGV SRHRWTGRFE AHLWDKLSWN IAQKKKGKQV 180 YLGAYDDEEA AARAYDLAAI KYWGTSTFTN FPITDYEKEI ETMQTVTKEE YLASLRRQTA 240 LNLFYRVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY STQEEAARAY DIAAIEYRGI 300 NAVTNFDLST YIRWLKPGVN PAASAQESEP IIHPQTPPSH DFRAGETNQS FIFQRSFSTG 360 DLNKEEICER QLPVYSCNKS SSPTALGLLL RSSIFRELVA KNSIVSDEEN DSESGKVQPQ 420 VVNDEYLAEM FDDGNGATPF GVTSESYGID LEEPFRFNYD CLENPLQTRL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 103 | RRRMCTADAGAPDGRSVKRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027152657.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A068U1Q4 | 0.0 | A0A068U1Q4_COFCA; Uncharacterized protein | ||||
STRING | XP_008230978.1 | 1e-160 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3440 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 9e-76 | AP2 family protein |