PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g02010
Common NameGSCOC_T00039380001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 190aa    MW: 21665.2 Da    PI: 7.059
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g02010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ ar  g++Rt+k+c++rw++yl
      Cc07_g02010 15 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding55.81e-1768111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
      Cc07_g02010  68 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 111
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-24765IPR009057Homeodomain-like
PROSITE profilePS5129415.7681062IPR017930Myb domain
SuperFamilySSF466891.39E-3013109IPR009057Homeodomain-like
SMARTSM007171.0E-121464IPR001005SANT/Myb domain
PfamPF002492.7E-161562IPR001005SANT/Myb domain
CDDcd001673.72E-101762No hitNo description
PROSITE profilePS5129425.85963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2566117IPR009057Homeodomain-like
SMARTSM007171.8E-1567115IPR001005SANT/Myb domain
PfamPF002491.4E-1668111IPR001005SANT/Myb domain
CDDcd001672.95E-1272111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDKKPCNSQD AEVRKGPWTM EEDLILINYI ANHGEGVWNS LARSAGLKRT GKSCRLRWLN  60
YLRPDVRRGN ITPEEQLLIM ELHAKWGNRW SKIAKHLPGR TDNEIKNYWR TRIQKHIKQA  120
ETFAGQGSEH ANDQASTSQI STTVDAAETY SPPSYSGNME TFQGPFPTES NENLWSMEDL  180
WSMQLLNGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251011722128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027073189.11e-141myb-related protein 305-like
SwissprotP813911e-109MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A068U0Q21e-140A0A068U0Q2_COFCA; Uncharacterized protein
STRINGevm.model.supercontig_186.71e-116(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.14e-89myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]