PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc07_g01770 | ||||||||
Common Name | GSCOC_T00039353001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 174aa MW: 19176.4 Da PI: 7.3347 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.4 | 6e-44 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el++++ Cc07_g01770 10 PCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQKELDATN 107 7*********************************************************************************************9987 PP DUF260 99 e 99 + Cc07_g01770 108 A 108 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.626 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-43 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MASSSYSNSP CAACKFLRRK CLPGCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEIQP 60 HQREDAVNSL AYEAEARLKD PVYGCVGAIS VLQRQVLRLQ KELDATNADL MRYASNEMPQ 120 GYPGNSGSNQ MGRRMNNAGS SFGQYEYPSP YYMSSWDNSF SGDHPDKPGD SNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-68 | 7 | 118 | 8 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-68 | 7 | 118 | 8 | 119 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG964666 | 0.0 | HG964666.1 Coffea arabica clone BAC 126-3E, cultivar IAPAR 59. | |||
GenBank | HG964667 | 0.0 | HG964667.1 Coffea arabica clone BAC 144-23N, cultivar IAPAR 59. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027073953.1 | 1e-127 | LOB domain-containing protein 25-like | ||||
Refseq | XP_027101865.1 | 1e-127 | LOB domain-containing protein 25-like | ||||
Refseq | XP_027154136.1 | 1e-127 | LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 1e-69 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
Swissprot | Q9FML4 | 1e-69 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A068U181 | 1e-126 | A0A068U181_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0001s35280.1 | 8e-85 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 5e-72 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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