PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g01010
Common NameGSCOC_T00019186001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 708aa    MW: 77905.9 Da    PI: 5.6783
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g01010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.13.4e-1313427061374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPilkfshl 96 
                  lv+lLl+cAeav++++  la+++L +l+  ++p gd+mqR+a++f+eAL arla + +   ++   +p +  + ns e l++++++++++P++kf+h+
  Cc07_g01010 342 LVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVASCFAEALGARLAATLTAKPATAasRPFNPFPPNSLEILKIYQILYQACPYIKFAHF 439
                  68****************************************************944333333301333333456*********************** PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+      e+++etg+ L+++A++l++pfef++ v ++ledl++++L
  Cc07_g01010 440 TANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----YPEAVRETGRCLTELAHSLHIPFEFHP-VGEQLEDLKPHML 532
                  *****************************************************....9**************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  + + gEalaVn+v +lh ++    sl     ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kvE+ ++++
  Cc07_g01010 533 NRRVGEALAVNSVNRLHWVP--GNSLG----NLLGMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPAESAQRAKVEQYIFAP 624
                  *******************9..44555....5****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+n+va eg+er+ rhe+lekWr+ +e  G+k v ls++a++q k ll  ++ +gyr+ e++g+l+lgW+dr++v++SaWr
  Cc07_g01010 625 EIRNIVAEEGRERVRRHERLEKWRKIMEGKGYKGVGLSTNAVTQSKILLGLYSCEGYRLTEDKGCLLLGWQDRAIVAASAWR 706
                  *********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.367316686IPR005202Transcription factor GRAS
PfamPF035141.2E-128342706IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MINSLCGSMG SLKNDSCATK LRPSSPNEPA VSESRKAPTP PSSEYDHASG TSLVPPSLKF  60
PALKLQPDQD VEIQSPDRCL WEFFADQLEG DFMISSPVRN VPSSSPAPQA ASGYQNTTTH  120
DIINNNSSSY NFSHAQAQAM HGLSLMVCSP SPPRMSSPLG PYNRDKGKGL SPLHRVLNSP  180
NHEYMQVESL SLPALEFLDD LDKDDDDFGG SYSNSCKGPD IAGISSSDCF DLSSVPELLE  240
CLTMPNPAAS SRFCGSMAET EDNDTSTTTS NIYQLSSSGE SAPLLQQLQQ ERQQEKQQQL  300
GSISHRPNHQ PPPPVEMNLN SSLMVQPLSI GPEQEQDSGL RLVHLLLACA EAVAKEEYML  360
ARRYLHHLNR VVTPLGDSMQ RVASCFAEAL GARLAATLTA KPATAASRPF NPFPPNSLEI  420
LKIYQILYQA CPYIKFAHFT ANQAIFEAFE AEERVHVIDL DILQGYQWPA FMQALAARPG  480
GAPFLRITGV GPYPEAVRET GRCLTELAHS LHIPFEFHPV GEQLEDLKPH MLNRRVGEAL  540
AVNSVNRLHW VPGNSLGNLL GMIRDQAPNI VTIVEQEASH NGPYFLGRFL EALHYYSAIF  600
DSLDATFPAE SAQRAKVEQY IFAPEIRNIV AEEGRERVRR HERLEKWRKI MEGKGYKGVG  660
LSTNAVTQSK ILLGLYSCEG YRLTEDKGCL LLGWQDRAIV AASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-963307057378Protein SCARECROW
5b3h_A2e-963307056377Protein SCARECROW
5b3h_D2e-963307056377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027153390.10.0protein SCARECROW-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A068VAP70.0A0A068VAP7_COFCA; Uncharacterized protein
STRINGXP_009803754.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.12e-89GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]