PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc07_g00980

Common Name

GSCOC_T00019183001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 200aa MW: 22550.4 Da PI: 10.0891

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc07_g00980	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.1	3.3e-32	118	176	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r + d+ +v++tYeg H h+ Cc07_g00980 118 LDDGYRWRKYGQKGVKNNKFPRSYYRCTHPGCNVKKQVQRLSVDEGIVVTTYEGMHIHP 176 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-33	103	176	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-28	110	177	IPR003657	WRKY domain
PROSITE profile	PS50811	29.103	113	178	IPR003657	WRKY domain
SMART	SM00774	6.1E-38	118	177	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	119	176	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MDHQQHQHHH QGMHFLGSLV QTPALSSISP NNEILASSSY RLNIGDACSS RENGFPGLKA 60 QIKGPTAQVK DIFESRTATV AAAENEVKSG TGSKRKGDQK KTRKPRFAFQ TRSQVDILDD 120 GYRWRKYGQK GVKNNKFPRS YYRCTHPGCN VKKQVQRLSV DEGIVVTTYE GMHIHPTEKN 180 NDNFEQILNQ MHIYPPLLM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-28	108	175	7	74	Probable WRKY transcription factor 4
2lex_A	8e-28	108	175	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM408700	4e-75	AM408700.1 Coffea canephora microsatellite DNA, clone M486.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027101902.1	1e-144	probable WRKY transcription factor 75
TrEMBL	A0A068V7J1	1e-149	A0A068V7J1_COFCA; Uncharacterized protein
STRING	XP_008389898.1	6e-65	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2204	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	4e-53	WRKY DNA-binding protein 75