PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc07_g00280
Common NameGSCOC_T00019094001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 389aa    MW: 43581.7 Da    PI: 7.8991
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc07_g00280genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-1083104526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+++ rtG+Ck+G +CkF+H+
  Cc07_g00280  83 DCPHYVRTGICKFGLTCKFNHP 104
                  5********************9 PP
2zf-CCCH29.99.3e-10126148527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                  +C++++  G CkyG+ C+++H++
  Cc07_g00280 126 ECKYYSTAGGCKYGEACRYSHSK 148
                  7********************95 PP
3zf-CCCH31.53.1e-10170193427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C++++r+G C yG rC F+H++
  Cc07_g00280 170 KECPYYMRNGSCGYGTRCVFHHPE 193
                  58********************96 PP
4zf-CCCH283.7e-09295321127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C +f++tG Ck+ + C+F+H++
  Cc07_g00280 295 PGQPECAYFMKTGDCKFKSACRFHHPK 321
                  5789*********************96 PP
5zf-CCCH27.65.1e-09337362126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++ +Cr++ r+G+Ck+G  C F H+
  Cc07_g00280 337 PGRNICRHYERFGICKFGRLCLFDHP 362
                  57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.01378105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.50278106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.34E-583107IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-883104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.493121149IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-5122148IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-5126151IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-7126148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-6127150IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4166193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.906166194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6166194IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7170193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5172192IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-4294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3294322IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6296321IPR000571Zinc finger, CCCH-type
SMARTSM003560.0029336363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.253336364IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6338362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-5339364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MGTYEDDHVS INITTSQLKR QAQETELGFS SSGLNSQTER ALVAKFQNVG LNSFDNDNRG  60
GFNSAHNDSG GPQRLPLRPY AGDCPHYVRT GICKFGLTCK FNHPVKKTSL VVKDKDWSSD  120
NASQIECKYY STAGGCKYGE ACRYSHSKKE SQVADPKFNF LGLPMRLGGK ECPYYMRNGS  180
CGYGTRCVFH HPEPSSMGGL DLQKSSLNEA SQPNQVPWST HPLSSTLSYR NDYSSHTIAN  240
SVPQWMHGHS EFNECQAEEV PQQRSRHTHL VTGADRADML ERDIPVQVEE FPERPGQPEC  300
AYFMKTGDCK FKSACRFHHP KGQPTCILSE KGLPLRPGRN ICRHYERFGI CKFGRLCLFD  360
HPVHPNLSTF KDWPSSELSG YDAGSWMQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027153829.10.0zinc finger CCCH domain-containing protein 66-like isoform X2
TrEMBLA0A068V7670.0A0A068V767_COFCA; Uncharacterized protein
STRINGVIT_14s0219g00170.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1640855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.15e-82C3H family protein