PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g23710
Common NameGSCOC_T00040535001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family SBP
Protein Properties Length: 360aa    MW: 39779.3 Da    PI: 8.7412
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g23710genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.81.1e-41111188178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +CqvegC+ dl+ ak+yhrrh++Ce hsk+p+v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL++hn+rrr++q+
  Cc06_g23710 111 RCQVEGCNLDLTAAKDYHRRHRICESHSKSPKVIVAGVERRFCQQCSRFHNLSEFDDKKRSCRRRLSDHNARRRRPQP 188
                  6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-34104173IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.744109186IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.91E-39111191IPR004333Transcription factor, SBP-box
PfamPF031101.9E-32112185IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEFELTKYPA SMHSQDSAMD GGKATELDRD YFGTVNSWPN ENRKEEDFIG VEKGESYSAP  60
AASLGFDQPV VGLKLGMPKD SKHLSSITNS SLSSNSGKRS RASHQGMQTS RCQVEGCNLD  120
LTAAKDYHRR HRICESHSKS PKVIVAGVER RFCQQCSRFH NLSEFDDKKR SCRRRLSDHN  180
ARRRRPQPDA MHLSSMGLPS SLYGRRAPSF LLTRMPSSSS NRTWECSSGL KMANAGNSLI  240
RASGVDVSPG HAQSHLNESQ NLPCALSLLS TPSWALHEPE SASLEQLMQG SVSIPQPASQ  300
LESQNWHLIS EARVSAEQAP SVTPFHSMAL QNTDNSHLPG YRSFKPPYDS GFHFTSRIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271121851184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167184KKRSCRRRLSDHNARRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066228.10.0squamosa promoter-binding-like protein 2
RefseqXP_027070113.10.0squamosa promoter-binding-like protein 2
TrEMBLA0A068V0T10.0A0A068V0T1_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136441216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-46squamosa promoter binding protein-like 2