PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g23490
Common NameGSCOC_T00040561001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 428aa    MW: 46389.9 Da    PI: 8.2017
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g23490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-12326125
                 --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                 +k elCr+f+r G C+yGdrCkF H
  Cc06_g23490  3 PKKELCRNFLR-GSCQYGDRCKFLH 26
                 699********.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.225229IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-7228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6327IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-9428IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MPPKKELCRN FLRGSCQYGD RCKFLHAAQT PARQNPFGLG MQTGNQFQHA NLQQQKPNPF  60
GFGVQNSSQP RGAGDFSSKQ NQFKAFENKW TRSSQANTGN SAASRQPDNQ PPSHKCTDPE  120
SCKRQILEDF ENERPLWKLT CYGHSKYGPC DIVGDISYEE FRATAYDDAK RGLSLQSIVE  180
RERNLLNSKL VEFDSLLRSP YKGLSNSAIG LQSPFPISVR NTSVSAQNSK PPSFSSFSQL  240
GTSLGGGATA SPNNFFGQQH AFQSTSQTSS TFKMTNSPFQ NSGFGSQLPS QTLQSPFASG  300
SASFGNSSVN TVQNPLFAST VSAQTSTLSN ASNNNMKSGF ASFSNSSVQN PFSTSAVSSQ  360
SSIFGDNTNA LFSVNANVNE VGLSAGNIDL KLTTPEENLN GDNSIWRKEE WGIGEIPEAE  420
PPVEYCR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027072967.10.0zinc finger CCCH domain-containing protein 16 isoform X2
TrEMBLA0A068V3260.0A0A068V326_COFCA; Uncharacterized protein
STRINGGorai.012G009900.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94392022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-76C3H family protein