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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g22670 | ||||||||
Common Name | GSCOC_T00040684001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 757aa MW: 85018.3 Da PI: 6.7675 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 384.3 | 1.4e-117 | 383 | 754 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++l+++cA+av+++d++ a++lL++++++asp gd +qRla++f+++L+ar+a+++s++ykal ++ts ++ l+a++l+ +P+ k+s+++ Cc06_g22670 383 LRTLMIHCAQAVAADDHRSANELLKQIRQHASPFGDGNQRLAHCFAQGLEARIAGTGSQIYKALVNKRTS---AADFLKAFHLYLASCPFRKISNFAS 477 57899***********************************************************999998...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I+ + +++ rvH+iDf+i +G+QWp+++q +a R++gpp++RiTg++ p++g +e+++etg+rLa++A+ ++vpfe+n+ vak++e+++le+L Cc06_g22670 478 NKTIMIESKNAVRVHVIDFGILYGFQWPTFFQRIAGREGGPPKVRITGIEFPQPGfrPAERIQETGHRLAEYAKMFKVPFEYNA-VAKKWETIKLEDL 574 ******************************************************9*****************************.7************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++++gE ++Vn++++ ++l+de+v++es r+ vLkl++s++P+++++ + ++++ F++rf eal ++salfd+le+ +pre er+ +E+e++gr Cc06_g22670 575 KIEEGEFVVVNCIYRSKNLFDETVAVESSRTIVLKLIRSINPDIFIHGIVNGAYSAPFFVTRFREALFHFSALFDMLETIVPREIPERTLIEKEIFGR 672 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e+ nv+aceg er+er et+++W+ r +aGF+++pl+ +++k+a + + + + ++e+s++l+lgWk+r ++s+S+W+ Cc06_g22670 673 EALNVIACEGWERVERPETYKQWQVRNLRAGFRQIPLDREIMKKAIEKVTSGYHKDFVIDEDSQWLLLGWKGRIIYSLSCWT 754 ********************************************999888888777*************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.657 | 357 | 734 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.0E-115 | 383 | 754 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 757 aa Download sequence Send to blast |
MDPSFLGIPA SARGIRLRNQ NLSTFGDLNP NGPTFETLYL DQKRVNHGLT TKNAPLQYNF 60 DGGVEFLPSD PSPSNLTSTS SLGVEDDFSE DLDFSDAVLR YINQMLMEED MEDKAYMLQE 120 SLDLQAKEKS FYEALGKKYP PSPEPHPTFI FQNGTSPDEC FSGDQCNLTS TSSNPGSYIA 180 EPSSLNNLAH YDATSLVHCH HAHRAPSSSL SSSTVNSFLD SPSSPPYGSH SVWNFKKGVE 240 EASKFLPDGN KLLNFSINGL FPLELAEEIE EPILKEEGRD EVNFLPTGSR GRKNPHGGDT 300 DLEERSSKLA AVFTESTVRS EEFDIVLLHS MGEGQVALAA YQENLRTAKS KVMLQNGQPK 360 LKGSSGGKGR RKKQNVKKQV IDLRTLMIHC AQAVAADDHR SANELLKQIR QHASPFGDGN 420 QRLAHCFAQG LEARIAGTGS QIYKALVNKR TSAADFLKAF HLYLASCPFR KISNFASNKT 480 IMIESKNAVR VHVIDFGILY GFQWPTFFQR IAGREGGPPK VRITGIEFPQ PGFRPAERIQ 540 ETGHRLAEYA KMFKVPFEYN AVAKKWETIK LEDLKIEEGE FVVVNCIYRS KNLFDETVAV 600 ESSRTIVLKL IRSINPDIFI HGIVNGAYSA PFFVTRFREA LFHFSALFDM LETIVPREIP 660 ERTLIEKEIF GREALNVIAC EGWERVERPE TYKQWQVRNL RAGFRQIPLD REIMKKAIEK 720 VTSGYHKDFV IDEDSQWLLL GWKGRIIYSL SCWTPT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-51 | 372 | 755 | 3 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027071485.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_027071486.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_027071487.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_027071488.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_027071489.1 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A068V0N6 | 0.0 | A0A068V0N6_COFCA; Uncharacterized protein | ||||
STRING | XP_009622916.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |