PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g22670
Common NameGSCOC_T00040684001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 757aa    MW: 85018.3 Da    PI: 6.7675
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g22670genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.31.4e-1173837541374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++l+++cA+av+++d++ a++lL++++++asp gd +qRla++f+++L+ar+a+++s++ykal  ++ts    ++ l+a++l+   +P+ k+s+++ 
  Cc06_g22670 383 LRTLMIHCAQAVAADDHRSANELLKQIRQHASPFGDGNQRLAHCFAQGLEARIAGTGSQIYKALVNKRTS---AADFLKAFHLYLASCPFRKISNFAS 477
                  57899***********************************************************999998...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I+ + +++ rvH+iDf+i +G+QWp+++q +a R++gpp++RiTg++ p++g   +e+++etg+rLa++A+ ++vpfe+n+ vak++e+++le+L
  Cc06_g22670 478 NKTIMIESKNAVRVHVIDFGILYGFQWPTFFQRIAGREGGPPKVRITGIEFPQPGfrPAERIQETGHRLAEYAKMFKVPFEYNA-VAKKWETIKLEDL 574
                  ******************************************************9*****************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  ++++gE ++Vn++++ ++l+de+v++es r+ vLkl++s++P+++++   +  ++++ F++rf eal ++salfd+le+ +pre  er+ +E+e++gr
  Cc06_g22670 575 KIEEGEFVVVNCIYRSKNLFDETVAVESSRTIVLKLIRSINPDIFIHGIVNGAYSAPFFVTRFREALFHFSALFDMLETIVPREIPERTLIEKEIFGR 672
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e+ nv+aceg er+er et+++W+ r  +aGF+++pl+ +++k+a   +   + + + ++e+s++l+lgWk+r ++s+S+W+
  Cc06_g22670 673 EALNVIACEGWERVERPETYKQWQVRNLRAGFRQIPLDREIMKKAIEKVTSGYHKDFVIDEDSQWLLLGWKGRIIYSLSCWT 754
                  ********************************************999888888777*************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.657357734IPR005202Transcription factor GRAS
PfamPF035145.0E-115383754IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MDPSFLGIPA SARGIRLRNQ NLSTFGDLNP NGPTFETLYL DQKRVNHGLT TKNAPLQYNF  60
DGGVEFLPSD PSPSNLTSTS SLGVEDDFSE DLDFSDAVLR YINQMLMEED MEDKAYMLQE  120
SLDLQAKEKS FYEALGKKYP PSPEPHPTFI FQNGTSPDEC FSGDQCNLTS TSSNPGSYIA  180
EPSSLNNLAH YDATSLVHCH HAHRAPSSSL SSSTVNSFLD SPSSPPYGSH SVWNFKKGVE  240
EASKFLPDGN KLLNFSINGL FPLELAEEIE EPILKEEGRD EVNFLPTGSR GRKNPHGGDT  300
DLEERSSKLA AVFTESTVRS EEFDIVLLHS MGEGQVALAA YQENLRTAKS KVMLQNGQPK  360
LKGSSGGKGR RKKQNVKKQV IDLRTLMIHC AQAVAADDHR SANELLKQIR QHASPFGDGN  420
QRLAHCFAQG LEARIAGTGS QIYKALVNKR TSAADFLKAF HLYLASCPFR KISNFASNKT  480
IMIESKNAVR VHVIDFGILY GFQWPTFFQR IAGREGGPPK VRITGIEFPQ PGFRPAERIQ  540
ETGHRLAEYA KMFKVPFEYN AVAKKWETIK LEDLKIEEGE FVVVNCIYRS KNLFDETVAV  600
ESSRTIVLKL IRSINPDIFI HGIVNGAYSA PFFVTRFREA LFHFSALFDM LETIVPREIP  660
ERTLIEKEIF GREALNVIAC EGWERVERPE TYKQWQVRNL RAGFRQIPLD REIMKKAIEK  720
VTSGYHKDFV IDEDSQWLLL GWKGRIIYSL SCWTPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-513727553380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027071485.10.0scarecrow-like protein 9
RefseqXP_027071486.10.0scarecrow-like protein 9
RefseqXP_027071487.10.0scarecrow-like protein 9
RefseqXP_027071488.10.0scarecrow-like protein 9
RefseqXP_027071489.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A068V0N60.0A0A068V0N6_COFCA; Uncharacterized protein
STRINGXP_009622916.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein