PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g22030 | ||||||||
Common Name | GSCOC_T00009008001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | Nin-like | ||||||||
Protein Properties | Length: 214aa MW: 24573.7 Da PI: 6.3724 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 63.4 | 3.8e-20 | 46 | 93 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ Cc06_g22030 46 ITREVLEQNSTRKLEDAAKNIGVSRSTLKRICREYGIHRWPPRKARKI 93 899*****************************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.186 | 29 | 113 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 5.9E-17 | 46 | 93 | IPR003035 | RWP-RK domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-4 | 52 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF54277 | 4.25E-15 | 117 | 205 | No hit | No description |
SMART | SM00666 | 1.9E-12 | 126 | 208 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 17.288 | 126 | 208 | IPR000270 | PB1 domain |
Pfam | PF00564 | 5.2E-15 | 127 | 207 | IPR000270 | PB1 domain |
CDD | cd05992 | 1.79E-14 | 129 | 205 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 7.0E-13 | 129 | 207 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MVSIEHDEPI VEDPQRDGAS IEQGDNEVTN LKVQKPSCTL KSDLGITREV LEQNSTRKLE 60 DAAKNIGVSR STLKRICREY GIHRWPPRKA RKINQAFAEQ KIVQHSTEDT HEPHQSGAAR 120 LEDDNGMWVK VEYQGFMIKF RLPFSARKID LEEKVAQRLN LPVGSFKIEY QDEDDDRIRI 180 TCDEDLRTFM SSLSSLGRTT IKMYIVEDSP NRR* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027174643.1 | 1e-131 | protein NLP7-like | ||||
Refseq | XP_027177039.1 | 1e-134 | protein NLP5-like | ||||
TrEMBL | A0A068V575 | 1e-157 | A0A068V575_COFCA; Uncharacterized protein | ||||
TrEMBL | A0A068VG28 | 1e-157 | A0A068VG28_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4897 | 4 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 7e-15 | Nin-like family protein |