PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g22000

Common Name

GSCOC_T00015615001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 556aa MW: 63104.1 Da PI: 5.4584

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g22000	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.3	7.4e-19	394	441	4	51
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 i+ e+l+++ s +++dAAk gv+ ++LKriCR+yGI+RWP Rk k+ Cc06_g22000 394 GITREVLEQNSSRNLEDAAKAFGVSRSTLKRICREYGINRWPPRKAKK 441 6999*****************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.81	376	462	IPR003035	RWP-RK domain
Pfam	PF02042	9.1E-17	395	441	IPR003035	RWP-RK domain
Gene3D	G3DSA:1.10.10.60	5.1E-5	396	431	IPR009057	Homeodomain-like
SuperFamily	SSF54277	6.54E-15	470	554	No hit	No description
SMART	SM00666	1.3E-10	475	555	IPR000270	PB1 domain
PROSITE profile	PS51745	14.578	475	555	IPR000270	PB1 domain
Pfam	PF00564	7.8E-12	476	554	IPR000270	PB1 domain
CDD	cd05992	5.16E-16	476	555	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.8E-16	476	555	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MGDKTYLTTC DQPFALQCYC DRDVKKLCEY RKHCLEYLIP VDDEELIIGP PGRVFRSGLP 60 EYAPYVRHYT IGEYPQRDYA VGRVAGYSAL PIYHPTRHLS SGVLEFASPS NIYVPLDRIP 120 KELQNLLSTV NLTTTCRSLA QVSSCQDGEI ARIEEVLDEV IEVCELDDDD DTETWTTSGE 180 ILSSHRGVDF IRKGQGVVGR AFSSKSACFC RDIRQLSITE YPLVAQARSW KNYACFAVCL 240 RSSCLNNCIY VLEFLLHKNQ IDHGDPRTLL NSIMETLKER LGSSFKIASG QELGQKLTVE 300 VIKVSLEDEF DSFEIYNTTG VESTPRLREN NGIVESPHRQ ELPQNIENTA HDEGNTEINV 360 ANPERGGASM EQSGNEVNNV KKQKPICTLR SELGITREVL EQNSSRNLED AAKAFGVSRS 420 TLKRICREYG INRWPPRKAK KFNQAFVEQR VVQPSTENTK EQHRPDTTRL GDDSSIWVKA 480 EYQGYTMKFR LPFSAHKFNL EEKVAQRLNL PIGSFKIEYQ DEENEWIWIA CDEDLSTCMS 540 TLSSPGRTTI RMLVR*

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MGDKTYLTTC DQPFALQCYC DRDVKKLCEY RKHCLEYLIP VDDEELIIGP PGRVFRSGLP  60
EYAPYVRHYT IGEYPQRDYA VGRVAGYSAL PIYHPTRHLS SGVLEFASPS NIYVPLDRIP  120
KELQNLLSTV NLTTTCRSLA QVSSCQDGEI ARIEEVLDEV IEVCELDDDD DTETWTTSGE  180
ILSSHRGVDF IRKGQGVVGR AFSSKSACFC RDIRQLSITE YPLVAQARSW KNYACFAVCL  240
RSSCLNNCIY VLEFLLHKNQ IDHGDPRTLL NSIMETLKER LGSSFKIASG QELGQKLTVE  300
VIKVSLEDEF DSFEIYNTTG VESTPRLREN NGIVESPHRQ ELPQNIENTA HDEGNTEINV  360
ANPERGGASM EQSGNEVNNV KKQKPICTLR SELGITREVL EQNSSRNLED AAKAFGVSRS  420
TLKRICREYG INRWPPRKAK KFNQAFVEQR VVQPSTENTK EQHRPDTTRL GDDSSIWVKA  480
EYQGYTMKFR LPFSAHKFNL EEKVAQRLNL PIGSFKIEYQ DEENEWIWIA CDEDLSTCMS  540
TLSSPGRTTI RMLVR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027069177.1	0.0	protein NLP7-like
Refseq	XP_027069178.1	0.0	protein NLP7-like
TrEMBL	A0A068V4U1	0.0	A0A068V4U1_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	3e-50	NIN like protein 7