PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g21980

Common Name

GSCOC_T00015612001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 419aa MW: 47206.7 Da PI: 7.3729

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g21980	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	62.4	8e-20	253	300	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ Cc06_g21980 253 ITREVLEQNSTRKLEDAAKNIGVSRSTLKRICREYGIHRWPPRKARKV 300 899*****************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.118	236	320	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-16	253	300	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.03E-14	330	415	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.4E-13	331	412	No hit	No description
PROSITE profile	PS51745	14.705	333	415	IPR000270	PB1 domain
SMART	SM00666	9.7E-11	333	415	IPR000270	PB1 domain
Pfam	PF00564	3.2E-13	334	413	IPR000270	PB1 domain
CDD	cd05992	2.62E-12	336	413	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MCLLESTAGD ESDNYLCKPR ASQDGEIAKI EEALSEVTAI CGLDDTETWI TSGEILSSHG 60 GVDFIQKGQG VVGRAFSSKS ACFCRDIKQL SITEYPLVPI ARRFNYSACF AVCLQSPCSS 120 NCIYVLEFFL PMNKKDYRDP RTLLHSLMET LKKRLQNSFK IPSGQELGQK LTVEVIKVSP 180 KYEFDSFEIC NTTSVGSTPR LAKGQGGGGM VQLDFSSQQV DTANAYINEQ RDNEVTNLKM 240 QKPSYTLKSD LGITREVLEQ NSTRKLEDAA KNIGVSRSTL KRICREYGIH RWPPRKARKV 300 NQAFAEQKIV QPSPEDTHEH HQSGAARLED DNGMWVKAEY QGRMIKFRLP FSARKINLEE 360 KVAQLLNLAM GSFKIEYQDE DNDWIWITRD EDLRTSMSTL SSLGRTTIKM LVKLIEHL*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MCLLESTAGD ESDNYLCKPR ASQDGEIAKI EEALSEVTAI CGLDDTETWI TSGEILSSHG  60
GVDFIQKGQG VVGRAFSSKS ACFCRDIKQL SITEYPLVPI ARRFNYSACF AVCLQSPCSS  120
NCIYVLEFFL PMNKKDYRDP RTLLHSLMET LKKRLQNSFK IPSGQELGQK LTVEVIKVSP  180
KYEFDSFEIC NTTSVGSTPR LAKGQGGGGM VQLDFSSQQV DTANAYINEQ RDNEVTNLKM  240
QKPSYTLKSD LGITREVLEQ NSTRKLEDAA KNIGVSRSTL KRICREYGIH RWPPRKARKV  300
NQAFAEQKIV QPSPEDTHEH HQSGAARLED DNGMWVKAEY QGRMIKFRLP FSARKINLEE  360
KVAQLLNLAM GSFKIEYQDE DNDWIWITRD EDLRTSMSTL SSLGRTTIKM LVKLIEHL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027067001.1	0.0	protein NLP6-like
TrEMBL	A0A068V571	0.0	A0A068V571_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	4e-42	NIN like protein 7