PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g21810

Common Name

GSCOC_T00015580001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 716aa MW: 80803.8 Da PI: 5.1101

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g21810	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	32.9	1.3e-10	573	601	24	49
RWP-RK 24 eLgvclTvLKriCRqyGIkRWP...hRki 49 ++ v+ ++LKriCR+yGI+RWP Rk+ Cc06_g21810 573 KIAVSRSTLKRICREYGIRRWPplkERKV 601 56799*****************4444665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.264	525	624	IPR003035	RWP-RK domain
Pfam	PF02042	7.6E-8	574	597	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.54E-15	628	714	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.5E-15	633	714	No hit	No description
PROSITE profile	PS51745	15.051	635	715	IPR000270	PB1 domain
SMART	SM00666	3.6E-12	635	715	IPR000270	PB1 domain
Pfam	PF00564	5.0E-14	638	714	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence Send to blast
MAKDAAGSLI IPQPVTADGA VIKDQIKWFL RLVTERIMWW RCLVQFWGLV KIGEKMYLTT 60 CDQPFALYCS YYFDGDVKKL CEYRKHCLEY LIPVGDEISA DQIGGFPENA PGRVFRSGLP 120 EYAPDVRDYT HREYPQRDYA VGRVRDYWAL RIYHPTRHLP IGVLEIVSTG YSFIPRHAVL 180 EKLQLLKAGA NTLKLVNNTL IYLWLMDNVF AESTTSVESD NYLRKPPHGK IAIIDEALSK 240 VRKICGLGYG VTKTWTISGE ILSRHRGVDF IRKGQGVVGR AFSSKSACFC RDVRQLSITE 300 YPLVVQARSY KYSACFAVCL QSSCSNNCIY VLEFFLPTNE EDEDEDKADY GEDEDEDKVD 360 YGDPMTLLHS LMETLKECLG SSFQIASGQE LGQKLTIEVI KVSPEDEFDS FEICNTTGIE 420 STTRLGEVQG GEEMMRLDFS SQQIDAANGS MNVHGGEGMM QLDFSSQLVD TANACINGVH 480 GQQSGIVGPP PRPEHAQGCV NISYQELNLA GVDVAHNSMN GIYEQQNGIV RSTIGQELVQ 540 NMVSIADHEP IVEDPERDDA IIEQSGNEFS ILKIAVSRST LKRICREYGI RRWPPLKERK 600 VNQVFAKQKA VQPTTENTEE NHQSDATRLE DDSSMWVIKA KYQEDKIKFE LPSSARKIDL 660 EKNIAQRFNL SRGSFKIKYQ DELNDWILIT CDTDLSFCMK TLHKLGRTTI EMLVS*

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence Send to blast

MAKDAAGSLI IPQPVTADGA VIKDQIKWFL RLVTERIMWW RCLVQFWGLV KIGEKMYLTT  60
CDQPFALYCS YYFDGDVKKL CEYRKHCLEY LIPVGDEISA DQIGGFPENA PGRVFRSGLP  120
EYAPDVRDYT HREYPQRDYA VGRVRDYWAL RIYHPTRHLP IGVLEIVSTG YSFIPRHAVL  180
EKLQLLKAGA NTLKLVNNTL IYLWLMDNVF AESTTSVESD NYLRKPPHGK IAIIDEALSK  240
VRKICGLGYG VTKTWTISGE ILSRHRGVDF IRKGQGVVGR AFSSKSACFC RDVRQLSITE  300
YPLVVQARSY KYSACFAVCL QSSCSNNCIY VLEFFLPTNE EDEDEDKADY GEDEDEDKVD  360
YGDPMTLLHS LMETLKECLG SSFQIASGQE LGQKLTIEVI KVSPEDEFDS FEICNTTGIE  420
STTRLGEVQG GEEMMRLDFS SQQIDAANGS MNVHGGEGMM QLDFSSQLVD TANACINGVH  480
GQQSGIVGPP PRPEHAQGCV NISYQELNLA GVDVAHNSMN GIYEQQNGIV RSTIGQELVQ  540
NMVSIADHEP IVEDPERDDA IIEQSGNEFS ILKIAVSRST LKRICREYGI RRWPPLKERK  600
VNQVFAKQKA VQPTTENTEE NHQSDATRLE DDSSMWVIKA KYQEDKIKFE LPSSARKIDL  660
EKNIAQRFNL SRGSFKIKYQ DELNDWILIT CDTDLSFCMK TLHKLGRTTI EMLVS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027067679.1	0.0	protein NLP7-like
TrEMBL	A0A068V508	0.0	A0A068V508_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4897	4	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	9e-37	NIN like protein 7