PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g21040
Common NameGSCOC_T00034094001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 382aa    MW: 42726.7 Da    PI: 8.8011
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g21040genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-15107152147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
      Cc06_g21040 107 RGHWRPYEDAKLKELVCQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 152
                      899*****************************.***********996 PP
2Myb_DNA-binding56.37.3e-18159202146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
      Cc06_g21040 159 KMAFSEEEEERLLAAHRMYGNK-WAMIARLFP-GRTDNAVKNHWHV 202
                      679*******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.431102153IPR017930Myb domain
SMARTSM007172.5E-11106155IPR001005SANT/Myb domain
PfamPF002494.0E-14107152IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-27107200IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-25108160IPR009057Homeodomain-like
CDDcd001675.97E-11110151No hitNo description
PROSITE profilePS5129426.454154208IPR017930Myb domain
SMARTSM007171.6E-14158206IPR001005SANT/Myb domain
PfamPF002491.1E-14159201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-20161207IPR009057Homeodomain-like
CDDcd001673.00E-7170201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MNFQHKGDGD SLQYGFQGVN SSSPPIPKVP IPMDFPWEGE SDLNIRGGMI QYLIAAPSEQ  60
QVKMPWCFHL VGDHGREARR EDDGRVDQET QESKKKNGGG HTKLCSRGHW RPYEDAKLKE  120
LVCQYGPQNW NLIAEKLEGR SGKSCRLRWF NQLDPRINKM AFSEEEEERL LAAHRMYGNK  180
WAMIARLFPG RTDNAVKNHW HVIIARKQRE ENSVYRRRKP SSFQAYHKGF TVNTLQNSAC  240
NGSGVSTNNR EESASTCTDL SLTPSSNRVS PGYFTSSVSA EKYHSFGPDL NQAASSGDER  300
KVMKTRSAVQ YCQLNNNEPI AKATVTINPS AQSDSSSELS ASESVANNAS TRLLLLNDKI  360
ENGSESYKLP FIDFLGVGAR K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-321072077107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066736.10.0transcription factor CSA-like
SwissprotQ5NBM81e-72CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A068UTV20.0A0A068UTV2_COFCA; Uncharacterized protein
STRINGXP_010245158.11e-104(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.13e-66myb domain protein 56
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]