PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g20620
Common NameGSCOC_T00023010001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 302aa    MW: 33976.2 Da    PI: 6.5311
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g20620genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.54e-17157210256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tk q   Lee F+++++++  ++++LA++l+L  rqV vWFqNrRa++k
  Cc06_g20620 157 RKKLCLTKAQSALLEESFKQHSTLNP-QKQDLARELNLRPRQVEVWFQNRRARMK 210
                  678899******************96.679***********************99 PP
2HD-ZIP_I/II111.46.1e-36157245191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+ l+k q++lLEesF+++++L+p +K++lareL+l+prqv+vWFqnrRAR+k+kq+E+dye+Lk++y+ l++en+rL+ke +eL+ +l
  Cc06_g20620 157 RKKLCLTKAQSALLEESFKQHSTLNP-QKQDLARELNLRPRQVEVWFQNRRARMKLKQTEVDYEFLKKCYEMLTDENRRLQKELQELK-AL 245
                  6999*********************9.689*********************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-16143213IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-15151215IPR009057Homeodomain-like
PROSITE profilePS5007114.107153212IPR001356Homeobox domain
SMARTSM003897.2E-15155216IPR001356Homeobox domain
CDDcd000864.37E-14157213No hitNo description
PfamPF000461.3E-14157210IPR001356Homeobox domain
PROSITE patternPS000270187210IPR017970Homeobox, conserved site
SMARTSM003409.1E-22212255IPR003106Leucine zipper, homeobox-associated
PfamPF021834.9E-10212246IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNFSTDLGEI KTTPSRIFAL FLRAAINQLE DSISANEKAI SEVKDSRTLT ALKDYDVLFR  60
DSLRPVNAFV TAMGVESDDK IFKTNVSFFP LTHSANKASN NEPPPSAADL HRQDSAASSF  120
SNNSVKRERE LGSSEEVEIE TVSSRVSDED DDGSNGRKKL CLTKAQSALL EESFKQHSTL  180
NPQKQDLARE LNLRPRQVEV WFQNRRARMK LKQTEVDYEF LKKCYEMLTD ENRRLQKELQ  240
ELKALKLVQP LYMQLTVATL TMCPSCERVD GVGENSSSKS PFSMAPKPHF FNSFTNPSTA  300
C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204212RRARMKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027075542.11e-127homeobox-leucine zipper protein HAT22-like
SwissprotP466042e-73HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A068UCT00.0A0A068UCT0_COFCA; Uncharacterized protein
STRINGVIT_00s0732g00010.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.13e-62HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]