PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g19350
Common NameGSCOC_T00028996001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 464aa    MW: 50689.5 Da    PI: 7.5313
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g19350genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.67.5e-10176217445
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                   k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Cc06_g19350 176 QKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 217
                  5788*************************9877777766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.6E-10173236IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438175219IPR004827Basic-leucine zipper domain
CDDcd147081.23E-23177229No hitNo description
SuperFamilySSF579591.04E-6177220No hitNo description
PfamPF001707.0E-7177217IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-7178222No hitNo description
PROSITE patternPS000360180195IPR004827Basic-leucine zipper domain
PfamPF141448.7E-33259334IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MGSTTVKVGA EHNRSVASGM PSFISPTPVS NQMATEGNAT HSSRITDFGV LEQYLGFRIG  60
DGANVNRSPA FNLGVTNAAA GTDLQSGKSA NSNLPSAISM PQTTQLQKGS QPNVLSVPVA  120
HHENWGESNM ADSSSRTDTS TDPDGEDKNQ RGDMGQSTGA ATYDSSDKSK EKNMDQKTLR  180
RLAQNREAAR KSRLRKKAYV QQLENSRLKL TQLEQELQRA RQQGIFISSM GDQSHGTSGN  240
GAMAFDVDYA RWLEEHNRHI NELRTAVNAH AGDADLRVIV DNVTAHYNDI FRVKGTAAKA  300
DVFHILSGMW KTPAERCFMW IGGFRPSELL KLLEHHLEPL TEQQMAGIYN LQESSHQAED  360
ALSQGMEALQ QSLAETLANG ASGPEGASGN VANYMGQMAM AMGKLGTLEG FLRQADNLRQ  420
QTLQQMHRIL TTRQSARALL TINDYFSRLR ALSSLWLARP REG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067078.10.0transcription factor TGA2.3-like isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A068UMV10.0A0A068UMV1_COFCA; Uncharacterized protein
STRINGXP_009759888.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-135bZIP family protein