PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g19260
Common NameGSCOC_T00028980001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 143aa    MW: 15356.6 Da    PI: 9.2379
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g19260genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.62.2e-151158148
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 k+ie +s r vtfskRr+g++KK  EL    +a+vavi+fs+ g+ y+
  Cc06_g19260 11 KKIEKESSRMVTFSKRRKGLFKKVGELQAKIGANVAVIVFSPAGNPYT 58
                 68*****************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.7E-18362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.1363IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-19469IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-13525IPR002100Transcription factor, MADS-box
PfamPF003191.3E-201258IPR002100Transcription factor, MADS-box
CDDcd001209.15E-161760No hitNo description
PRINTSPR004041.4E-132540IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-134061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGSGKKKIEI KKIEKESSRM VTFSKRRKGL FKKVGELQAK IGANVAVIVF SPAGNPYTMG  60
DVSLFDNALN KGMGPASGGA TFNGFDFEKG GEDANAFCAS TSNGLREWLN GIDVDGCAEI  120
EELLHMKEQL LAARERIQGL IR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067499.13e-86MADS-box transcription factor 23-like
TrEMBLA0A068ULY41e-98A0A068ULY4_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.13e-12AGAMOUS-like 24