PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g16420
Common NameGSCOC_T00030695001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 357aa    MW: 39322.9 Da    PI: 5.6124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g16420genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-09200247455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++ Lq
  Cc06_g16420 200 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQCLQ 247
                  8*************************9....899999***********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-15194265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.94E-8194251No hitNo description
Gene3DG3DSA:4.10.280.109.1E-15196264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.265196246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6200247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-8202252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDSMEAIQAR SATCEVIGGE FSHQVGEEIH RLMSVQPDSG SSFTALLELP ANQAVELLVH  60
SPEAAIAESP SVTRPLEQFS QCPPPPPAST LIFPSDTALV DRAAKFSTLV NSDDNSRAKL  120
ESVKQEPADS DSNPNSNSSP AVSHPAVEQN PNSAKRKERE KKGKESNKKG KKAANETSED  180
GREKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ ELVPGCNKIS GTAMVLDEII  240
NHVQCLQRQV EFLSMRLATV NPRVDFNLDT LLAAESGSPI ETNFQGMVMP SMWPEEQVHG  300
NRQQYQQLWH LDGLHQPIWG REEDNSNFIT PENSLLSYDS SANSASLHSN QLKMEL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066689.10.0transcription factor bHLH48-like
RefseqXP_027175147.10.0transcription factor bHLH48-like
SwissprotQ3EAI11e-86BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A068UNI20.0A0A068UNI2_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000211301e-150(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40292342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.24e-88bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]