PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g16390
Common NameGSCOC_T00030699001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 422aa    MW: 46102.1 Da    PI: 8.8773
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g16390genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.2e-13349394655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L++l+P+     +k  s a++L +AveYIk+Lq
  Cc06_g16390 349 SIAERVRRTRISERMRKLQDLVPNM----DKQTSTADMLDLAVEYIKDLQ 394
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.453343393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16346408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-12347396No hitNo description
Gene3DG3DSA:4.10.280.101.5E-14348403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-10349394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-14349399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MYGDSQALSS DDSSIFHSSW DAKEALFAQS RELFMDSVSA SSTNYSSLEF NNQYTGANQN  60
SSGLLRFRSA PSSLLESLSA ADKIVENSVE NRGLTSRFNS SCEAQSNQVS HSSSTKGYTL  120
KSQLPPQYPR ASRGRLAQLG SVNGVYRVPG SMAMDHQRQP KMSPTLTRQN SSPAELFSHL  180
TAQSGYATMR GVGNYRLTNG ASGDLSPSSN RFKGPMSFSS GSPTTLGMLS RISEVENETG  240
GADGSNDDKL GNTNGDTQLY GSGFSFGSWN NSPKFAENLT GLKREIDSDQ NLFSDSQGGE  300
PRNRPNILSH HLSLPNTAEL AAMDKLMQFQ DTVPCKIRAK RGCATHPRSI AERVRRTRIS  360
ERMRKLQDLV PNMDKQTSTA DMLDLAVEYI KDLQKQYKTL SDIRANCKCS AMQKPVPDQM  420
V*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066211.10.0transcription factor bHLH130-like
TrEMBLA0A068UR530.0A0A068UR53_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000210621e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-83bHLH family protein