PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g16130
Common NameGSCOC_T00030734001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 484aa    MW: 54045.8 Da    PI: 6.9736
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g16130genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.9e-32309363155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r+rWt+eLH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR 
  Cc06_g16130 309 KTRIRWTQELHDRFVECVNHLGGADKATPKAILKLMEWEGLTIFHVKSHLQKYRN 363
                  68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.448306366IPR017930Myb domain
SuperFamilySSF466891.97E-17307363IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-28308364IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24309364IPR006447Myb domain, plants
PfamPF002491.6E-8313362IPR001005SANT/Myb domain
PfamPF143798.4E-18393440IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MPSVLFATAY SSKEFVNKKD RFPTVISCNF GLDNFSGTHL LLLFLVQSFE LLHLTSIIII  60
PSMNIQKIGS YERMLQNCGH TSDYASEFSY RFPQSFGNPP EASDMGLCFQ SADRDEGSQR  120
QNFWPNNSSS TIMGQIGSAS AFYAAEVYMG LTQLGARDNQ STCSTQLSKI NHDVHIPSYD  180
QSENCLFTDS PPRKLEPCSF PANTTLQAVP NSQTSNSQYI SSEASYRHPF SDLTEKERLW  240
QLKKKLLGDV DNPNKRQHTM PLQRNQDVGV SCNLYDPHFP NVKPSGRSSG CISPISTNPA  300
SAAGAVTNKT RIRWTQELHD RFVECVNHLG GADKATPKAI LKLMEWEGLT IFHVKSHLQK  360
YRNAKYIPAS AEGKSDKGPC TSNEAQIDIK NGMQLKEALQ LQLDVQRRLH DQLEVQRKLQ  420
LSIEEQARQL KLILDKQQET AKSLLETQNS AITSPTYLST TLENVDILIS EDSESTPFSS  480
KIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-23309366259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-23309366259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-23309366259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-23309366259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-23309366259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-23309366259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-23309366259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-23309366259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066737.10.0myb family transcription factor PHL5-like
TrEMBLA0A068UPE80.0A0A068UPE8_COFCA; Uncharacterized protein
STRINGXP_009603787.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24912458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-64G2-like family protein