PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g15370
Common NameGSCOC_T00030837001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 695aa    MW: 75761.6 Da    PI: 6.5151
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g15370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.57e-29208261155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  Cc06_g15370 208 KPRVVWSIELHRKFVAAVNQL-GIEKAVPKRILDLMNVEGLTRENVASHLQKYRL 261
                  79*******************.********************************8 PP
2Response_reg81.82.3e-27261341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ll  +l+k +y +v++++++++al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++++++ + +  Ga 
   Cc06_g15370  26 VLAVDDDPICLKLLDGLLRKCQY-HVTTTSQARAALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLVMKGVTHGAC 120
                   799********************.***************888889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+ +eel++
   Cc06_g15370 121 DYLVKPVRIEELRN 134
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-1662692IPR017053Response regulator B-type, plant
SuperFamilySSF521721.57E-3523145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.4E-4323160No hitNo description
SMARTSM004486.1E-3224136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.21425140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.7E-2426135IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.19E-2827140No hitNo description
PROSITE profilePS5129412.018205264IPR017930Myb domain
SuperFamilySSF466891.61E-19205265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-30205266IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-24208261IPR006447Myb domain, plants
PfamPF002495.1E-6210260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MTVEELRGNS EGGDRNYDNF PVGMRVLAVD DDPICLKLLD GLLRKCQYHV TTTSQARAAL  60
KMLRENKDRF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSANSDPKL VMKGVTHGAC  120
DYLVKPVRIE ELRNIWQHVI RRKKFDTNKQ GKSTYEDKAL QGHGDVCQGH QNTGTTDQNG  180
KLNKKRKDEE DESEDTGNDH EDPATQKKPR VVWSIELHRK FVAAVNQLGI EKAVPKRILD  240
LMNVEGLTRE NVASHLQKYR LYLKRISSVA TQQANMVAAL GGKDAAYMRM STLDGFGDFR  300
TLTGSGRLSN PAFASYTQGG MLGRLNSPAG INLRNLASPT VVHPSHAQTL NNSTGTLGKL  360
HPAVSPASQT ASVFQGVPSS LELDQLQQNK SAMHIGDFNP MDDSRIFGAP SAFTDARALA  420
INSNSNLTGV PNNSLMLQGN SQQILAGGGF VDQSSFPSES FNRDVGVSSK FVDHGRTNEN  480
WQSAVQLSKF PSNALAPNDS FSQGQLPLSN VRDNNSSARP HQQNSPLGFS STATTAAPLE  540
DSRGEIQCQE GLVSSSVQNL SQASAQRWGV SKQSYSLNSN NSFSTLNPQA SPPLSQSMGQ  600
TGITDRRMDM CLTDQSGVGI SSFLQHSQVE NPTTGSRTRS GEDYMLEQIR PQGGFVPNSY  660
DSLDDLMSAI KREPNGSMFD GDMGFDAYQF GSCI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-25206267364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027067929.10.0two-component response regulator ARR12-like
RefseqXP_027067930.10.0two-component response regulator ARR12-like
SwissprotQ6K8X61e-145ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A068UNX60.0A0A068UNX6_COFCA; Two-component response regulator
STRINGXP_009795713.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-135response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]