PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g15010
Common NameGSCOC_T00030892001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 518aa    MW: 56075 Da    PI: 7.4779
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g15010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.12.4e-25207262359
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ ++v+ei+Y+++Hnh+
  Cc06_g15010 207 DGYNWRKYGQKQVKSPQGSRSYYRCTYSECCAKK-IECSDDSNRVMEIVYRSHHNHD 262
                  9*******************************98.*********************7 PP
2WRKY100.51e-31379436259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                   Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++er+++++++v+itY+g H+h+
  Cc06_g15010 379 ADGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIERAKDNTNAVIITYKGVHDHD 436
                  6********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-21198264IPR003657WRKY domain
SuperFamilySSF1182902.35E-20201264IPR003657WRKY domain
SMARTSM007744.8E-24205263IPR003657WRKY domain
PROSITE profilePS5081118.246207264IPR003657WRKY domain
PfamPF031063.0E-18207262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.1E-33363438IPR003657WRKY domain
PROSITE profilePS5081133.006373438IPR003657WRKY domain
SuperFamilySSF1182901.57E-27374438IPR003657WRKY domain
SMARTSM007741.7E-36378437IPR003657WRKY domain
PfamPF031062.0E-24380435IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MDAKNFNSEN NSSSKSPSCE GEDEAAAQNS KYRKEFDENS RGGGGDGYEQ VNSKTVDNSS  60
IPVVVAQMSN NRASSTPGTL ATVGPSDPHC KFEVAVDNEM QRLEPAAELK DQVGMSYQEE  120
FRIIADQAVP DQTQNQQEPP NGPRSSEPSP TSVTQPISSV PSPTLPEQKM SPGDNRNTSH  180
TSEADKKNSF DPKTLSVVSI QKTPSPDGYN WRKYGQKQVK SPQGSRSYYR CTYSECCAKK  240
IECSDDSNRV MEIVYRSHHN HDPPQKVNCT RGSRHSLSVA PANGSDSSVA PIGATADSVP  300
STSSKDSIQE TVSVPDPIQK DSSDSDDNAE TNIKQEREDE PEPSKRLKKT VASCSAPLLK  360
PGKKPKIVVH AAGDVGISAD GYRWRKYGQK MVKGNPHPRN YYRCTSAGCP VRKHIERAKD  420
NTNAVIITYK GVHDHDMPVP KKRHGPPSAP LVAAAAPASM STVQVVKSET IQNQVSATQW  480
SVDKEGGLKG QTLECGGEKN VESARTLLSI GFEIKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-27366438274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027072907.10.0probable WRKY transcription factor 32 isoform X1
SwissprotP595831e-122WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A068UPA10.0A0A068UPA1_COFCA; Uncharacterized protein
STRINGVIT_11s0037g00150.t011e-169(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-114WRKY DNA-binding protein 32