PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g12520 | ||||||||
Common Name | GSCOC_T00041527001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 24119.9 Da PI: 4.5572 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.1 | 3.8e-17 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g++v+eIr p++ r r++lg+++tae+Aa+a +aa +l+g Cc06_g12520 35 KYTGVRKRK-WGKYVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 84 89****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.9E-31 | 35 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-19 | 35 | 93 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-9 | 35 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.2E-29 | 35 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.87E-28 | 35 | 94 | No hit | No description |
PROSITE profile | PS51032 | 20.916 | 35 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-9 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-9 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MVKPEPQKRS SSPPSTAATL ERFKVAGDHS SSSIKYTGVR KRKWGKYVSE IRLPNSRERI 60 WLGSYDTAEK AARAFDAALF CLRGKSAKFN FPDNPPEIVN GRSMTPAEIQ VAAAQFANSE 120 HRLIGEPARI DNLVSDNSSS SISSLELQAE SPCPSVSDGV VQLESELPEI PLDNAFLDMF 180 GIFPGFDDFF VPPMPTVDLD GEENYEGYFS QDSTLWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-17 | 35 | 92 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027065228.1 | 1e-160 | ethylene-responsive transcription factor ERF017-like | ||||
Swissprot | Q84QC2 | 6e-52 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | A0A068U3G4 | 1e-159 | A0A068U3G4_COFCA; Uncharacterized protein | ||||
STRING | XP_009624342.1 | 9e-75 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1939 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 9e-52 | ERF family protein |
Publications ? help Back to Top | |||
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