PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g12520
Common NameGSCOC_T00041527001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 219aa    MW: 24119.9 Da    PI: 4.5572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g12520genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-173584255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr +k +g++v+eIr p++   r r++lg+++tae+Aa+a +aa  +l+g
  Cc06_g12520 35 KYTGVRKRK-WGKYVSEIRLPNS---RERIWLGSYDTAEKAARAFDAALFCLRG 84
                 89****999.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.9E-313598IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-193593IPR016177DNA-binding domain
PfamPF008471.6E-93584IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-293593IPR001471AP2/ERF domain
CDDcd000181.87E-283594No hitNo description
PROSITE profilePS5103220.9163592IPR001471AP2/ERF domain
PRINTSPR003676.6E-93647IPR001471AP2/ERF domain
PRINTSPR003676.6E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVKPEPQKRS SSPPSTAATL ERFKVAGDHS SSSIKYTGVR KRKWGKYVSE IRLPNSRERI  60
WLGSYDTAEK AARAFDAALF CLRGKSAKFN FPDNPPEIVN GRSMTPAEIQ VAAAQFANSE  120
HRLIGEPARI DNLVSDNSSS SISSLELQAE SPCPSVSDGV VQLESELPEI PLDNAFLDMF  180
GIFPGFDDFF VPPMPTVDLD GEENYEGYFS QDSTLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1735921472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065228.11e-160ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC26e-52ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A068U3G41e-159A0A068U3G4_COFCA; Uncharacterized protein
STRINGXP_009624342.19e-75(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.19e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]