PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g12040
Common NameGSCOC_T00041583001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRF
Protein Properties Length: 431aa    MW: 48013.7 Da    PI: 8.7018
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g12040genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.99.6e-2582126145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Cc06_g12040  82 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEQ 126
                  79****************************************997 PP
2QLQ55.12.3e-191546233
          QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33
                 +FTa+Q+q+L++Q+l++Ky++++ PvPp+Ll 
  Cc06_g12040 15 PFTASQWQELEHQALIFKYMVSGTPVPPDLLY 46
                 8*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009518.2E-101450IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.8061550IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.0E-151548IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.26482126IPR014977WRC domain
PfamPF088794.2E-2183125IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MMSATTSARS SSRFPFTASQ WQELEHQALI FKYMVSGTPV PPDLLYTVRR SLDSSLSSKL  60
LFHQPQLGWN SCFQMGFGRK IDPEPGRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGRNRS  120
RKPVEQQLIT TPIPPPPIIS PPSFSNNNTS STATPPTAIP ITSISKNHPP SPSSPTSHHS  180
FSCLTSLATS SESQPHHHHH NHNHNHGTGI NQPGYSLHHP LLYPHSSCSR PPGTSHDRIS  240
SEENSANYLL GSGPYSQASK GYSYGQGGKE EVDEHAFFCE ASGTVRNLSG GSSVVDHDGT  300
SSWQLAPLTM GSPSGSHLKQ RSSYSVSNGG HSSYLQLQSL NHDSDYNTTS RQQKQASQQQ  360
YYGLGDRDDH QNKRVMHRFF DEWPPKDNKD SCWLDNNDHH DHKLSKIQLS ISMPNASSHH  420
DFFMTRNGTS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700706e-42KC770070.1 Pyrus pyrifolia microsatellite TXY185 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027176298.10.0growth-regulating factor 5
TrEMBLA0A068U4L70.0A0A068U4L7_COFCA; Uncharacterized protein
STRINGXP_009767378.11e-110(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-48growth-regulating factor 5