PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g11570
Common NameGSCOC_T00041642001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 345aa    MW: 39542.9 Da    PI: 9.1925
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g11570genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35651572103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk++e+++d+e++++isws++++sfvv+d+++f++++Lpk+Fkh+nf+SFvRQLn+Y F+k+++++         weF++++F+kgkk+ll++ik
   Cc06_g11570  65 FLKKTFEMVDDPETDSTISWSSTNTSFVVWDPHKFSRDLLPKHFKHNNFSSFVRQLNTYRFRKTDSDR---------WEFANEEFQKGKKHLLKNIK 152
                   9***************************************************************9999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Cc06_g11570 153 RRKQH 157
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.4E-5661154IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-3561154IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3861154IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-3165154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-176588IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-17103115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-17116128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDQLNVGFKR SVPVEEEDAP KVEKAEILTV KEEPVVFLDE DGPFGNFSDV PKPLQGLHEV  60
GPPPFLKKTF EMVDDPETDS TISWSSTNTS FVVWDPHKFS RDLLPKHFKH NNFSSFVRQL  120
NTYRFRKTDS DRWEFANEEF QKGKKHLLKN IKRRKQHSQM LQHQGAGQPW LDSAKYISET  180
ELQKLRNDQN TLKLELLRLK QQQVNTENYL AAVKERLRTA ESKQKYMAIF MVKAFKNPLF  240
VQLFIEKMKQ KRALGSGEVS KKRRLAAVDG KNLQPQDELT TVDPEIQILF SPDHESSGPL  300
QEQLVGASSN TSENFILNRA RELPSWTNGM SPLQGSEGNA VLFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-236315427129Heat shock factor protein 1
5d5v_B1e-236315427129Heat shock factor protein 1
5d5v_D1e-236315427129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153LKNIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6873740.0JQ687374.1 Coffea arabica strain Laurina HSFA9 (hsfa9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065759.10.0heat shock factor protein HSF30-like
TrEMBLA0A068U3R60.0A0A068U3R6_COFCA; Uncharacterized protein
STRINGXP_009606363.11e-133(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.16e-73heat shock transcription factor A2