PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g11560
Common NameGSCOC_T00041644001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 867aa    MW: 95562.8 Da    PI: 6.5924
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g11560genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.8e-06457476626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  Cr+++  G C+ G++CkF+H+
  Cc06_g11560 457 CRHYLN-GRCQEGEKCKFSHD 476
                  **9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.638451478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6451476IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4452477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4456476IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.422480507IPR000571Zinc finger, CCCH-type
SMARTSM003560.0052480506IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-5482505IPR000571Zinc finger, CCCH-type
SMARTSM003562.8508532IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.559510533IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MENSGFGTTR DHLFTFPPHS NRLRRRPLQS QTYRTLLSIL SHCNALQSFP QPQVPDDNDD  60
IDSNKSGEEA EHESLVNHNG MDLEMSLVQQ KSPFNETKEV HGFQDGGADT LNEVDGLDPT  120
DIKDQRKETV TQDNNVNLVG SSIVNNQTCE VPHEKDTCNV VDFHREFSPR RELNVFNEPF  180
IKEVPETVSS SVDIDGIAGM SIPVESNDAM NPTMEGHLPK GLEHELHLKQ KELEKLVSTS  240
GNLDLSFGAI EDDEIEEGEI SGEISEEMDL LYEDAVSLED KKSGKVQISE HTDKEAFTGD  300
DGDARLGDCD TRSSMFLDTV DSETERFRKE HTSAEVFSHS EETATKTLDG YDASLEIGLT  360
AEQVSGVNKT EHPAISLENL SQHGLMHEDT AENKSSVDAK MEASVGKKKR KKGPLTKERR  420
EKKKKKERIK RAAKNRELGV KRLKLQPLSK PKTVTYCRHY LNGRCQEGEK CKFSHDTTPL  480
TKSKPCSYFA RHSCMKGDNC PFDHQLSKYP CNNIVTNGFC SRGAGCLFSH EISAKDGSLP  540
TSNVTKPESK SPTLVSKTIS KKQVNHQGVP HQHADAKFSV MANFSGKSTE KKASEHLDRP  600
SAQTPKGICF ISHVRSPPGD SSKHKQAVPH LKGDNSEKVS YSMTRNLEDS IQKSNDLAKG  660
APSKMPRGIN FLSFGKRPLD ESLNRDGVSE SLLGQVSKSK LVDSPLKSEV HVKIDNQAAQ  720
SSADLELKVN KTANIVSPSS MPQAMKFLSY GKTPVDNPTA ISQHDTLRSI VNMGLPLVQR  780
KEYAPDGLKF FPAMPQRSAS SSQPFDQSLD QPSAGGMLSF SKTSLLLNAP TSVQKALQST  840
LAFAAKLDSE IKLNQSLNTP SDMNKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1407411KKRKK
2409425RKKGPLTKERREKKKKK
3418426RREKKKKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068415.10.0uncharacterized protein LOC113693866 isoform X1
RefseqXP_027068416.10.0uncharacterized protein LOC113693866 isoform X1
TrEMBLA0A068U4C20.0A0A068U4C2_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77401720