PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g11520
Common NameGSCOC_T00041648001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 548aa    MW: 61003.8 Da    PI: 6.2678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g11520genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-13361405554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h + ErrRR+++N++f+ Lr+llP+      +K +Ka++L+ + eY++sL
  Cc06_g11520 361 HMISERRRREKLNESFQALRSLLPPG-----TKKDKASVLTSTREYLSSL 405
                  7889********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.94E-13354410No hitNo description
PROSITE profilePS5088816.088356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-17358425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15360422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-11361405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-15362411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MDSVFSLGEG DRAIFLQNLV QSSGCTYICL WSYDPQPSIC LRYRDGYYHE RSNNQQPSTS  60
SGSLAQRRFI EYGQSIIIVE RSHIPGLAFL NNLPYMELQL ADLRRMASTE TQRLFYEEAG  120
IKTAIFMGCN AGEIELGFSD GSQVNMGLEM RNLFPVDFSH PLLDPTTTRD QLPQQPSTTD  180
QNRPASSSSS LRSLSYDSPE YSPLLFDMPA TSYLVPEPQR EAMIQQALGS AHRPVFSPTA  240
ASPHEQAIWA LNQIRNIQLP TIESEDAAMT EAMIAVISSS ASPSSSVQQP QQNFPPNYRV  300
NGSHASAFRR YRPSLAPRPP TSSRIQGENV LKRSITFLRT LNSMRSQEQM PAGRTSSTLH  360
HMISERRRRE KLNESFQALR SLLPPGTKKD KASVLTSTRE YLSSLKDQVA ELSKRNHVLE  420
AQLLPKMSAA VEETISGVSS VERVEVQIRD VGASTSASSS SSSSSRIVDL QVILRAEVSM  480
VDLVVRLLEF LKIDQNVSLM SVEANTRMAE PTSVSNVVLM RLRIEEGEWD ESAFQEAIRR  540
VLNDLAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364369ERRRRE
2365370RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066709.10.0putative transcription factor bHLH041
TrEMBLA0A068U3S10.0A0A068U3S1_COFCA; Uncharacterized protein
STRINGXP_008242363.11e-152(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-66bHLH family protein