PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g10860 | ||||||||
Common Name | GSCOC_T00041725001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 29075.6 Da PI: 6.9931 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9.4e-15 | 14 | 58 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrw 44 rg+W++eEd +l ++++++G+g +W + +r+ g++R++k+c++rw Cc06_g10860 14 RGPWSPEEDAILRNYIEKYGTGgNWIALPRKAGLKRCGKSCRLRW 58 89******************************************* PP | |||||||
2 | Myb_DNA-binding | 28.8 | 2.8e-09 | 57 | 79 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W+ Ia++++ gRt++++k++w++ Cc06_g10860 57 RWSVIASHLP-GRTDNDVKNHWNT 79 4*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-17 | 5 | 57 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.209 | 9 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-16 | 13 | 83 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.34E-17 | 14 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.4E-13 | 14 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.03E-14 | 16 | 81 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-12 | 58 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRAPCCDKT KVKRGPWSPE EDAILRNYIE KYGTGGNWIA LPRKAGLKRC GKSCRLRWSV 60 IASHLPGRTD NDVKNHWNTK LKKKLSAAGA KRAPDCYGNS TYPIVGSDAP VQYSSMDHMV 120 PGYSMTEVVP DLLYDSSSTD QFSLPELFEV QKNSTLQKNG FTTSSSQEIS SLSPSCSLAK 180 SYSSWNDNLF GEEVGFFMEL ESRSSNYNLV QSAQQEEKVR NEVEGSCLPI YSYPTASFFD 240 QMSDNILPPQ GHHQTAFPIL D* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027067301.1 | 1e-176 | transcription factor RAX1-like | ||||
TrEMBL | A0A068U4L9 | 0.0 | A0A068U4L9_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000932 | 7e-54 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15590 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23000.1 | 5e-42 | myb domain protein 37 |