PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g10260 | ||||||||
Common Name | GSCOC_T00041808001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 35077.1 Da PI: 5.5054 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.1e-17 | 84 | 134 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g Cc06_g10260 84 PVYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFACPEMAARAHDVAALSIKG 134 68*****998.**********854...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.0E-12 | 84 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 85 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 85 | 143 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-34 | 85 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.247 | 85 | 142 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.16E-29 | 86 | 144 | No hit | No description |
PRINTS | PR00367 | 6.4E-9 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-9 | 108 | 124 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MADPPHSETE SSSHSGTLDS AHMHHHRKRG RDDNNTTTTT TTSAASRSND DNDTHRSSKN 60 SNIRSQTGNN SNNNNNNNSS SKHPVYRGVR MRAWGKWVSE IREPKKKSRI WLGTFACPEM 120 AARAHDVAAL SIKGNSAILN FPELAGSLPR PATCSPPDVQ AAALKAAQMD FEMDGRAKPG 180 DESSHSQSSS SSSSSSRVMT PCLSSMTSSS SSSSLLSSVT SSSPSSCTEE VSTAAQESEA 240 AAAEELCEIV ELPSLGASYD SVESAREELV FMDSVDNMGW DYGHPWLHGS VETYGYFGEN 300 HAGLMGMAEV DNPVVSGSFE GLLWQLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 73 | 142 | 2 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027065569.1 | 1e-174 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 3e-54 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A068U4R1 | 0.0 | A0A068U4R1_COFCA; Uncharacterized protein | ||||
STRING | XP_009782186.1 | 3e-64 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA212 | 24 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-47 | ERF family protein |
Publications ? help Back to Top | |||
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