PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g10260
Common NameGSCOC_T00041808001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 328aa    MW: 35077.1 Da    PI: 5.5054
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g10260genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-1784134155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  Cc06_g10260  84 PVYRGVRMRA-WGKWVSEIREPKK---KSRIWLGTFACPEMAARAHDVAALSIKG 134
                  68*****998.**********854...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-1284134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3085143IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2085143IPR016177DNA-binding domain
SMARTSM003802.3E-3485148IPR001471AP2/ERF domain
PROSITE profilePS5103222.24785142IPR001471AP2/ERF domain
CDDcd000189.16E-2986144No hitNo description
PRINTSPR003676.4E-98697IPR001471AP2/ERF domain
PRINTSPR003676.4E-9108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MADPPHSETE SSSHSGTLDS AHMHHHRKRG RDDNNTTTTT TTSAASRSND DNDTHRSSKN  60
SNIRSQTGNN SNNNNNNNSS SKHPVYRGVR MRAWGKWVSE IREPKKKSRI WLGTFACPEM  120
AARAHDVAAL SIKGNSAILN FPELAGSLPR PATCSPPDVQ AAALKAAQMD FEMDGRAKPG  180
DESSHSQSSS SSSSSSRVMT PCLSSMTSSS SSSSLLSSVT SSSPSSCTEE VSTAAQESEA  240
AAAEELCEIV ELPSLGASYD SVESAREELV FMDSVDNMGW DYGHPWLHGS VETYGYFGEN  300
HAGLMGMAEV DNPVVSGSFE GLLWQLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1773142272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065569.11e-174ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD33e-54DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A068U4R10.0A0A068U4R1_COFCA; Uncharacterized protein
STRINGXP_009782186.13e-64(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-47ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]