PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g10030
Common NameGSCOC_T00041839001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 333aa    MW: 36333.5 Da    PI: 6.2509
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g10030genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000431972351255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Cc06_g10030 197 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 235
                  6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.63185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.05E-6195239No hitNo description
SuperFamilySSF474592.88E-10195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-7199242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAGSPNWWNL NNMRPPSQQP SSFLAPPPNL FPQYMPPPPP SSWADNQELP ESWSQLLLGG  60
LVAEDQDQNK SGVMHAKKTL ENWEEQLLQQ QPPNGSNIVD HVKQENSAAN GAYNMYGHEN  120
AEFHAAKTTW SQMMPVSSPT SCVTTLSSNM LDFSSSKSDG RHPPPDRSSE CNSTAIGGVS  180
KKARVQPSST QSSFKVRKEK LGDRITALHQ LVSPFGKTDT ASVLLEAIGY IRFLQSQIEA  240
LSSPYLGSKS GNVRQQQSAQ GERNCLFPED PGQLLNDNCM KRKAASEQDS EEEVKKDLRS  300
RGLCLVPISC TLQVGSDNGA DYWAPALGGG FR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068499.10.0transcription factor bHLH68-like
RefseqXP_027072446.10.0transcription factor bHLH68-like isoform X1
SwissprotQ8S3D11e-96BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A068U4320.0A0A068U432_COFCA; Uncharacterized protein
STRINGXP_010254048.11e-167(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15192247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-92bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]