PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g09660
Common NameGSCOC_T00041885001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 339aa    MW: 37021.3 Da    PI: 5.7908
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g09660genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.53e-35121032102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d++ + li w + +nsf+v+d+ +f++k+Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         w F++++F +g+++ll++i 
   Cc06_g09660  12 FVMKTYQMVNDPSSDGLIAWGKANNSFIVIDPLDFSQKILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WAFANEWFLRGQTHLLKNIS 99 
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   Cc06_g09660 100 RRKH 103
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-518101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-339101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.4E-3710101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.2E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.2E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEAANNNIIA PFVMKTYQMV NDPSSDGLIA WGKANNSFIV IDPLDFSQKI LPAYFKHNNF  60
SSFVRQLNTY GFRKVDPDRW AFANEWFLRG QTHLLKNISR RKHCSRNSSN SRAEDDEDDE  120
GIIMELARLK QEQKELDLQL SRMNKRLEAT ERRPQQMMAF LSKVAQDPEI LPRMMLEKER  180
TKRLNIASGD KKRSIMMISS TSPSASVSSP PSSSGMPLTS SSVKSEEEED DANLDVDNYC  240
HFSSSPETPS SAWFSQRPVL GRSVIAQESS NSGGNISSSL SSGSSAGSSG STVAPPLDGV  300
PASDATFGGD ISYVGRAAVG EAVSPQPPYP FSLLGGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A7e-2591017110Heat shock factor protein 1
5hdn_A7e-2591017110Heat shock factor protein 1
5hdn_B7e-2591017110Heat shock factor protein 1
5hdn_C7e-2591017110Heat shock factor protein 1
5hdn_D7e-2591017110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066406.10.0heat stress transcription factor C-1
SwissprotQ9LV525e-92HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A068U4V70.0A0A068U4V7_COFCA; Uncharacterized protein
STRINGXP_009770587.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-82heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]