PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g09510
Common NameGSCOC_T00041904001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 360aa    MW: 41820.8 Da    PI: 4.2175
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g09510genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix378.8e-12115200286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  W ++e  +L+e+  e+  +l+r++l++ +W+e ++k+ +  g er+  +C++ ++ l+++ykk+++ ++k   +  s++++f++++
  Cc06_g09510 115 WNEEESFVLLEVWGERYLELGRRSLRAEDWAELAEKVsEMSGRERNEMECRNQLDVLKQKYKKERAKMEKVGGGFLSKWVFFKKMD 200
                  *************************************445688***************************999************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-17112201No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDDSDEEGPY LTKPTFRSKP AIRNPHSYPL NTHYTTNDAI FAQEDDEFED DEESPQFQNA  60
QSGYYYQSFY EDEPKRSKKK RKLESLVPNY ELAPRAGLNA PKSSNLGGGS SRDSWNEEES  120
FVLLEVWGER YLELGRRSLR AEDWAELAEK VSEMSGRERN EMECRNQLDV LKQKYKKERA  180
KMEKVGGGFL SKWVFFKKMD VLLNLRMRGH VGLGCGVDSG EYVFMNPRVY LDKSNVLDEM  240
RDSPGVSDEE NEEEEEGLGL GKDEEDGESA RLLADSIQRF GEIYEKIESS KRRQMMELEK  300
MRRDFQRDLE LQKQQIVERA QAEIAKIREG VEEEDDDEEE DDDEEEEDDD DVQNENIQV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17381PKRSKKKRK
27480KRSKKKR
37782KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065252.10.0trihelix transcription factor ASIL1-like
RefseqXP_027065253.10.0trihelix transcription factor ASIL1-like
TrEMBLA0A068U4W70.0A0A068U4W7_COFCA; Uncharacterized protein
STRINGXP_009783625.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120602022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-81Trihelix family protein