PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g06260
Common NameGSCOC_T00031405001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family B3
Protein Properties Length: 363aa    MW: 40261.9 Da    PI: 6.8668
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g06260genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.21.4e-3285193199
                  EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                  f+k ltpsdv+k++rlv+pk++ae++            gg+  ++  l++edesg+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F++++
  Cc06_g06260  85 FEKPLTPSDVGKLNRLVIPKQHAEKYfplsgggnndsaGGE--KGLLLSFEDESGKGWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVLFERHR 180
                  99*****************************9988876555..6679************************************************755 PP

                  SSEE..EEEEE-S CS
           B3  87 rsefelvvkvfrk 99 
                   ++ +l+++++++
  Cc06_g06260 181 LDGDRLFIGWRKR 193
                  599999***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-4174195IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-3180192IPR015300DNA-binding pseudobarrel domain
CDDcd100174.25E-3083183No hitNo description
PfamPF023621.4E-2985193IPR003340B3 DNA binding domain
SMARTSM010192.1E-2685194IPR003340B3 DNA binding domain
PROSITE profilePS5086314.38185194IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MEPSSAKTRP SRPNTTTTAA AFWPNSHLYR PISAHSPHNS AAFSFDLNNE EEDEATAIED  60
ERESNARIIT KQEEDKEIVP KEPLFEKPLT PSDVGKLNRL VIPKQHAEKY FPLSGGGNND  120
SAGGEKGLLL SFEDESGKGW RFRYSYWNSS QSYVLTKGWS RFVKEKRLDA GDVVLFERHR  180
LDGDRLFIGW RKRRAGGPSQ GGQEGTGAAQ AQPATSGGGG GGGGWTRVYF PSGHHPYPQQ  240
LHQYHDDGHG HGHGPALPYQ PDCLRAAAAV LQSQTTAAAS ANSKRLRLFG VNLECQQQPD  300
HDSETSSEPP TTPEASSTWT QDQPHYQFHS YNPRLHHSYF NHHNHMDINF SSDMNQTGYR  360
QG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-48781931113B3 domain-containing transcription factor NGA1
5os9_B1e-48781931113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068604.10.0B3 domain-containing protein At2g36080-like isoform X1
SwissprotQ9FNI31e-64Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A068UQ150.0A0A068UQ15_COFCA; Uncharacterized protein
STRINGXP_009600245.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38012446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.21e-61B3 family protein