PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g05860
Common NameGSCOC_T00043153001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 416aa    MW: 46583.5 Da    PI: 7.4322
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g05860genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.41.5e-334599155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 kprl+Wtp+LHerF+eav+qLGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl
  Cc06_g05860 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 99
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3842102IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-3143100IPR009057Homeodomain-like
SuperFamilySSF466898.96E-1744100IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-2445100IPR006447Myb domain, plants
PfamPF002492.5E-104798IPR001005SANT/Myb domain
PfamPF143797.6E-24142188IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MYHHHQQGKN IHSSSRMPIP PERHLFLQGG NGPGDSGLVL STDAKPRLKW TPDLHERFIE  60
AVNQLGGADK ATPKSVLKLM GIQGLTLYHL KSHLQKYRLS KNLHGQANCG TNKAAAGDRI  120
PETNAASIIN PSIGSQANKN LHIGEAIQMQ IEVQRRLHEQ LEVQRHLQLR IEAQGKYLQA  180
VLEKAQETLG RQNLGSVGLE AAKVQLSELV SKMSDQCLNS AFSDMKELPG SCPQQTQTPQ  240
PTDCSMDSCL TSCEGSLRDQ EMHNNQMMLR PLNLRTDMEF NNMNNEASLQ HAERRWCDDL  300
MKEKRKLVST MNEEAEKACA AEKNIGNLSM SIGLQGGRWN SHHSYLEKRG REAETEIKFF  360
DQPHNRYGPI PPETQRPSEE YKLPFFAPKL DLNTDDGADA GSRCKQFDLN GFSWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-2244101158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-2244101158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-2245101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-2245101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-2245101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-2245101157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-2244101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-2244101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-2244101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-2244101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-2244101158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-2244101158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065684.10.0myb-related protein 2-like isoform X1
RefseqXP_027156141.10.0myb-related protein 2-like isoform X1
RefseqXP_027173590.10.0myb-related protein 2-like isoform X1
SwissprotQ9SQQ91e-137PHL9_ARATH; Myb-related protein 2
TrEMBLA0A068V4H40.0A0A068V4H4_COFCA; Uncharacterized protein
STRINGXP_009630167.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29462451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-131G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]