PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g05390
Common NameGSCOC_T00043087001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRF
Protein Properties Length: 412aa    MW: 45045.5 Da    PI: 7.3192
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g05390genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC82.34.1e-26173216144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Cc06_g05390 173 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 216
                  79***************************************987 PP
2QLQ43.21.2e-1595127234
          QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 
                  +F+ aQ+q+L+ Q+l++++++a++ vPpeLl +
  Cc06_g05390  95 YFSLAQWQELELQALIFRHMLAGAAVPPELLHH 127
                  7*****************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-794130IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.46895130IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-1195127IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.686173217IPR014977WRC domain
PfamPF088792.5E-22174216IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDFNPKQWRE HHQGESDQEH TTPCAKIPRL HLDYSVYPQH QPPSGDSSAL PLFVTEPTSI  60
SKLSSNLSAP CPNPTDSTPT PTKYPGEAGG MGSYYFSLAQ WQELELQALI FRHMLAGAAV  120
PPELLHHLVK KTLLNSSHHH HPYYAPHHHR HHYPPHFQSA LLQSGYWGRA SMDPEPGRCR  180
RTDGKKWRCS RDVVAGQKYC ERHMHRGRNR SRKPVEIPTT RTATPGNGGA NVCGGILKNS  240
SFLVAGDTPH SAISGSSPSI DILHLSQRSS ESIVRSQNDV HGDDTRSSGQ ILRHFFDDWP  300
RSLQESEDGG SNGTSATTDL SISVSGNATN SDFSLKLSTG DGDDTTDAEN VERERSQSNW  360
GVTGTWGANH VAPMGGPLAE ALRSSTSNSS PTSVLHQLQR RSASETSYVS T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4779842e-47AM477984.2 Vitis vinifera contig VV78X100436.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068304.10.0growth-regulating factor 4-like isoform X2
TrEMBLA0A068V4850.0A0A068V485_COFCA; Uncharacterized protein
STRINGVIT_08s0007g03760.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32832138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.15e-61growth-regulating factor 4