PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g05340
Common NameGSCOC_T00043080001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 245aa    MW: 25996.3 Da    PI: 6.4194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g05340genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1969118355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr++k++g+Wv+eIr+p     r   r++lg+f t+e+Aa+a++ a+++l+g
  Cc06_g05340  69 YRGVRRRKSSGKWVSEIREP-----RtpNRIWLGTFPTPEMAAAAYDVAALALKG 118
                  9******************9.....4478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.4E-3368132IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2068128IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-2868128IPR001471AP2/ERF domain
PROSITE profilePS5103222.868126IPR001471AP2/ERF domain
PRINTSPR003676.1E-86980IPR001471AP2/ERF domain
PfamPF008479.3E-1369118IPR001471AP2/ERF domain
CDDcd000181.25E-1869128No hitNo description
PRINTSPR003676.1E-8108128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MAAFVLVFKP TFTPQICPIL HPTNIHHNSS NKPEILYKLI MSSSSSGTRS GNSASSTSEA  60
PLPGRRPMYR GVRRRKSSGK WVSEIREPRT PNRIWLGTFP TPEMAAAAYD VAALALKGPE  120
AELNFPNSAS SLPAPASASP RDIQAAAASA AAAAGAAMDA LAGNAAALHA MNHALADKTE  180
NLISPTPPDH QKDHEFIDED LIFDMPNVLT NMAEGMLLSP PRLDIAGDET STESMGAHDL  240
WNHP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066380.11e-142ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR07e-55ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A068V4821e-177A0A068V482_COFCA; Uncharacterized protein
STRINGVIT_08s0007g03810.t011e-68(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-21ERF family protein