PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g05330
Common NameGSCOC_T00043079001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 527aa    MW: 59711.9 Da    PI: 7.7142
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g05330genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.88e-30104189187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Cc06_g05330 104 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 189
                  8*************************************999*****************************98..55667*******85 PP
2trihelix56.95.6e-18405475271
     trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                  W + e+ +Li++r++me r+++ g+ ++ lWee+++km+  g+ r+p +Ck+kw++++ +  k+ + +k+ 
  Cc06_g05330 405 WAECEITKLIQLRTNMEPRFQQiGCPEEILWEEIAAKMACVGYDRTPLMCKDKWDSVSSYLMKCSKKRKES 475
                  *********************879****************************************9998873 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.085101164IPR001005SANT/Myb domain
PROSITE profilePS500906.98103162IPR017877Myb-like domain
CDDcd122031.12E-19104169No hitNo description
PfamPF138372.7E-20104190No hitNo description
PROSITE profilePS500906.679397462IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.4E-4400461IPR009057Homeodomain-like
SMARTSM007170.25401464IPR001005SANT/Myb domain
PfamPF138371.7E-12403481No hitNo description
CDDcd122036.87E-19405470No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEEHQYGMAD LRQYMNGSRP LFAPIPPPPP DLLSGHRTLT VVPTQQHYHE MVMGRGFRSD  60
SSTSTTTPSI RCGLSTGAAI GFGSGGLEME AGCGLGGGDG GTGRWPRQET LTLLEIRSRL  120
DPKFKEANQK GPLWDEVSRI MSEEHGYQRS GKKCREKFEN LYKYYKKTKE GKAGRQDGKH  180
YRFFRQLEAL YGDTSNAASV SENHLLGNSV RYNAVANNTT SVSNQEASFQ AQKLSDSLSL  240
SNSSDFDTTS SEDSDLQATV DNDSNEKRKK RSKGKRSWKA KIKDFIDSQM TKLMKKQEAW  300
LENMMKTIEQ KEQERMLREE DWRKQEAARV EREHRFWANE RTWIESRDAA MMEALQKLTG  360
KELVKASTTP DDQELMAAHG LQSMNKHHND NGSETIPSFL KGDSWAECEI TKLIQLRTNM  420
EPRFQQIGCP EEILWEEIAA KMACVGYDRT PLMCKDKWDS VSSYLMKCSK KRKESSRFCC  480
YNDQGASPPN GDTGHGMHDG CYRYLMGDAE NLWENYGAKF SKGVNQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269275KRSKGKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066597.10.0trihelix transcription factor PTL-like
SwissprotQ9LZS01e-132PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A068V3X70.0A0A068V3X7_COFCA; Uncharacterized protein
STRINGEOY081300.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-120Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]