PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g05190
Common NameGSCOC_T00043055001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 230aa    MW: 24912.4 Da    PI: 4.7016
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g05190genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00056202225123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ C++ F +   L++H +  H
  Cc06_g05190 202 HTCKTCSRGFGSENALESHTKAkH 225
                  79*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.97202229IPR007087Zinc finger, C2H2
PROSITE patternPS000280204225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MMGVILVSIV FPCLYKDFIF VHFLGAQYLY ICILCSDSDS EEEIPLTIAN NGKPEIKVKE  60
DKPADNKKAK AEKDSKQKVK IVEPNQDLLK RDGNEDSSDE DDDSSDEDDD ASLDEDEDES  120
DTDGDDESDE SDEETPKKVE ISKKRAIESA VKTPGPDKKA KLTTPQKTDG KKGSGHVATP  180
HPAKQAGKNK NQQTPKSGGG SHTCKTCSRG FGSENALESH TKAKHSAGK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027072211.11e-128histone deacetylase HDT1-like isoform X2
SwissprotQ6V9I62e-39HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A068V4671e-163A0A068V467_COFCA; Uncharacterized protein
STRINGXP_009612087.12e-52(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-23histone deacetylase 2C
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]