PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc06_g04300 | ||||||||
Common Name | GSCOC_T00023744001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 288aa MW: 32126.7 Da PI: 6.9161 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.9e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl Cc06_g04300 14 KGPWSPEEDAKLKEYIEKSGTGgNWIALPHKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38.8 | 2.2e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T +Ed ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Cc06_g04300 69 GDFTDDEDRIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.619 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.04E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.72 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.12E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 288 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KSGTGGNWIA LPHKAGLRRC GKSCRLRWLN 60 YLRPNIKHGD FTDDEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKIMGS 120 HKKCHQPSPY ASPYSGFEPA SLTSSPFSAP SPSISSAYHN YHTATQFRSL SGYETLSSTP 180 PSLSLLRFGG EASCSSSDGS STNQNSYGKE VEHDLQNYLC STGVDHEDQK IIFNSDVTIE 240 YADDQKPYSE NPLDYSLEEI KQLISTNLCN NFFVDENKTD EKVAYYN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027070112.1 | 0.0 | transcription factor RAX2 | ||||
TrEMBL | A0A068UF15 | 0.0 | A0A068UF15_COFCA; Uncharacterized protein | ||||
STRING | POPTR_0006s12530.1 | 1e-105 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-77 | MYB family protein |