PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g04300
Common NameGSCOC_T00023744001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 288aa    MW: 32126.7 Da    PI: 6.9161
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g04300genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.9e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
      Cc06_g04300 14 KGPWSPEEDAKLKEYIEKSGTGgNWIALPHKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.82.2e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
      Cc06_g04300  69 GDFTDDEDRIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.619962IPR017930Myb domain
SuperFamilySSF466891.12E-2611109IPR009057Homeodomain-like
SMARTSM007179.4E-121364IPR001005SANT/Myb domain
PfamPF002491.9E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-241569IPR009057Homeodomain-like
CDDcd001672.04E-81662No hitNo description
PROSITE profilePS5129422.7263117IPR017930Myb domain
SMARTSM007171.8E-1167115IPR001005SANT/Myb domain
PfamPF002494.5E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2370117IPR009057Homeodomain-like
CDDcd001676.12E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KSGTGGNWIA LPHKAGLRRC GKSCRLRWLN  60
YLRPNIKHGD FTDDEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKIMGS  120
HKKCHQPSPY ASPYSGFEPA SLTSSPFSAP SPSISSAYHN YHTATQFRSL SGYETLSSTP  180
PSLSLLRFGG EASCSSSDGS STNQNSYGKE VEHDLQNYLC STGVDHEDQK IIFNSDVTIE  240
YADDQKPYSE NPLDYSLEEI KQLISTNLCN NFFVDENKTD EKVAYYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027070112.10.0transcription factor RAX2
TrEMBLA0A068UF150.0A0A068UF15_COFCA; Uncharacterized protein
STRINGPOPTR_0006s12530.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-77MYB family protein