PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g02740
Common NameGSCOC_T00023536001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Dof
Protein Properties Length: 356aa    MW: 37746.1 Da    PI: 9.2577
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g02740genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1245e-3979138362
       zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  e+alkcprC+s+ntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++
  Cc06_g02740  79 EAALKCPRCESSNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 138
                  6789*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3762136IPR003851Zinc finger, Dof-type
PfamPF027012.0E-3281136IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.50682136IPR003851Zinc finger, Dof-type
PROSITE patternPS01361084120IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVFSSIPAYL DPANWQQPSN HQAGNSSGNH PPLQPPAQQQ PVPSFPPAQP HAGGGPGAVS  60
IRPGSMAERA RLANIPLPEA ALKCPRCESS NTKFCYFNNY SLTQPRHFCK TCRRYWTRGG  120
ALRNVPVGGG CRRNKRTKAT SSKSPVSSAD RQTTSSSTGT VSSNSTPSAN VLGLTPQIPP  180
MRFLSPLSQL SDHYSPAGDI SLNYGANNSA PLLGTSEMNF HIYPNNLLSC GLGGGAASLL  240
PGGGIEQWRL QQAQQFPFLG GLEASPPGLY SQLQASSVEP SGFVGETSRH HVRPKLSSSI  300
LTQQASVKME DNHQELNLST QLMGIPGNHD QWNGTAAAWT TDLASFSSSS TTNPL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027069259.10.0dof zinc finger protein DOF2.4
TrEMBLA0A068UG680.0A0A068UG68_COFCA; Uncharacterized protein
STRINGEOY075471e-122(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.18e-57DNA binding with one finger 2.4