PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g02630
Common NameGSCOC_T00023522001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 550aa    MW: 60895.9 Da    PI: 7.5152
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g02630genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1659105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ l++av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
      Cc06_g02630  59 KGGWTPEEDDTLKRAVAAFKGKCWKKIAEFFP-DRSEVQCLHRWQKVL 105
                      688*****************************.************986 PP
2Myb_DNA-binding64.12.7e-20111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEde++v++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
      Cc06_g02630 111 KGPWTQEEDEKIVELVAKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157
                      79******************************.*************97 PP
3Myb_DNA-binding48.32.4e-15163206146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++W  eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
      Cc06_g02630 163 KDAWALEEELALMNAHRVHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.57154105IPR017930Myb domain
SuperFamilySSF466892.44E-1455111IPR009057Homeodomain-like
SMARTSM007174.2E-1558107IPR001005SANT/Myb domain
PfamPF002492.7E-1559105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-1861109IPR009057Homeodomain-like
CDDcd001674.12E-1362105No hitNo description
PROSITE profilePS5129432.971106161IPR017930Myb domain
SuperFamilySSF466891.95E-31108204IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-27110159IPR009057Homeodomain-like
SMARTSM007178.2E-19110159IPR001005SANT/Myb domain
PfamPF002493.6E-19111157IPR001005SANT/Myb domain
CDDcd001671.38E-16113157No hitNo description
Gene3DG3DSA:1.10.10.603.3E-22160212IPR009057Homeodomain-like
PROSITE profilePS5129421.218162212IPR017930Myb domain
SMARTSM007174.4E-14162210IPR001005SANT/Myb domain
PfamPF002491.6E-13163206IPR001005SANT/Myb domain
CDDcd001671.68E-10165208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MTEVKTEGYC LENKQSAAAS SSSVSETSGS VTLKSPGIGS PTATSPSHRR TTGPIRRAKG  60
GWTPEEDDTL KRAVAAFKGK CWKKIAEFFP DRSEVQCLHR WQKVLNPELV KGPWTQEEDE  120
KIVELVAKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPG IKKDAWALEE ELALMNAHRV  180
HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGN LPPVAKNGLQ NGSTDISGLS  240
SVNVIGRSHN GSDAIALASS EITDGHKVEV VGKDQEDIAS SVPDIGASTS VFHNNSTDSE  300
VVRYEEESFQ INPGQIDPNI DAMFDKSRTS DEIYQYRVIE TPMSSQIPEY GTLYYEPPLL  360
ENYVPLDSDL QNGHQYSESS PKLSPIGIFT PPSVSSGGLY LQTPESILKI AAQSFPNTPS  420
ILRKRKTEHH LSTPSHKVGK DEESIKDRLL VSDESKQNST FQRSELQDRS FHESSHNDTN  480
GHCNAKSFNA SPPYRLRSKR TTVLKSVEKQ LKFVFNEEQC DNNTNHHSPT IKEVSPAKNN  540
LETAKTGVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-69582125159MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-69582125159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027072776.10.0transcription factor MYB3R-5
RefseqXP_027072777.10.0transcription factor MYB3R-5
SwissprotQ6R0321e-163MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLA0A068UEC50.0A0A068UEC5_COFCA; Uncharacterized protein
STRINGXP_009607346.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-158myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]