PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc06_g02490

Common Name

GSCOC_T00023506001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 299aa MW: 33138.6 Da PI: 6.8687

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc06_g02490	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.3	1.1e-31	115	171	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C +kk+ver++ dp++++itYeg H h Cc06_g02490 115 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCGAKKQVERCSGDPETLIITYEGLHLH 171 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.9E-30	108	171	IPR003657	WRKY domain
PROSITE profile	PS50811	27.944	109	174	IPR003657	WRKY domain
SuperFamily	SSF118290	6.8E-27	110	171	IPR003657	WRKY domain
SMART	SM00774	2.5E-36	114	173	IPR003657	WRKY domain
Pfam	PF03106	1.4E-25	115	171	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MADLQPTPWS ADELVGELLD NESPFFIIPD QVAEASNLDV ASNHSPVYNR LMSAVYSGPT 60 MQDIESALSV TKYRNQTEHV SQARVSMLDR DLSRTHENNY RYTLRIKSCD NALADDGYKW 120 RKYGQKSIKN SPNPRSYYRC TNPRCGAKKQ VERCSGDPET LIITYEGLHL HFAYPFFPCN 180 RPQQQHVNSP AKKKQRKPTS SSNSQGRNDQ EAQRSVTSSI NDAEESPDNV THSSPKGTEG 240 DYSPQGLLED VVPLPIRNPL INPTSVNSSS SSSFPSTPTS PSSISWPPGY STLGFVGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-22	113	171	16	74	Probable WRKY transcription factor 4
2lex_A	9e-22	113	171	16	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027070465.1	0.0	probable WRKY transcription factor 49
TrEMBL	A0A068UG40	0.0	A0A068UG40_COFCA; Uncharacterized protein
STRING	XP_008240747.1	1e-85	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12075	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	6e-49	WRKY DNA-binding protein 49