PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc06_g01890
Common NameGSCOC_T00023426001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 404aa    MW: 43661.4 Da    PI: 6.0649
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc06_g01890genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.9e-1759104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd +l ++v  +G ++W++Iar ++ gR++k+c++rw + 
      Cc06_g01890  59 KGPWSQEEDAILGRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 104
                      79******************************.***********985 PP

2Myb_DNA-binding57.14.1e-18111155147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ 
      Cc06_g01890 111 RRPFTDEEDSIILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 155
                      679*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.26454105IPR017930Myb domain
SuperFamilySSF466896.83E-3056152IPR009057Homeodomain-like
SMARTSM007171.7E-1358107IPR001005SANT/Myb domain
PfamPF002491.1E-1559104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-2660112IPR009057Homeodomain-like
CDDcd001673.87E-1361103No hitNo description
PROSITE profilePS5129427.887106160IPR017930Myb domain
SMARTSM007174.3E-17110158IPR001005SANT/Myb domain
PfamPF002491.6E-15111155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-24113159IPR009057Homeodomain-like
CDDcd001673.27E-13113156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MQVVTANDGS ANVITSEKRD SDDGEDGVVL IADGSGSGGV GGSSRSSQAN SKKSLDRVKG  60
PWSQEEDAIL GRLVSNFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPAVK RRPFTDEEDS  120
IILQAHAIHG NKWASIARLL PGRTDNAIKN HWNSTLRRRC MESDKFKFDS SQVMEDASAE  180
KSKASSNETL SCGDVNSSKS LDGKDVSSKE KMDDGQHEIS TQTDYQCSSE AGDPPSLFRP  240
VARISAFSVY SSLEVFETSL PSARLAHFEG TLDPVLKSDS GMSKLFQAAY GDQLIPHQCG  300
HCCFASSGTA ESRTSFLGPE FVDYAEPPSF PSHELATLAA DISNVAWCKS GLKNNSVENA  360
ANSVMSSRSH LQIRAPEGSR MYDSLEDRKC RLMGMMTEPV TSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-41561594107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065851.10.0transcription factor MYB1-like
TrEMBLA0A068UFY20.0A0A068UFY2_COFCA; Uncharacterized protein
STRINGXP_009783755.11e-157(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.14e-89myb domain protein 1