PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc06_g01890 | ||||||||
Common Name | GSCOC_T00023426001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 404aa MW: 43661.4 Da PI: 6.0649 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.9e-17 | 59 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v +G ++W++Iar ++ gR++k+c++rw + Cc06_g01890 59 KGPWSQEEDAILGRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 104 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.1 | 4.1e-18 | 111 | 155 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ Cc06_g01890 111 RRPFTDEEDSIILQAHAIHGNK-WASIARLLP-GRTDNAIKNHWNST 155 679*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.264 | 54 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.83E-30 | 56 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 59 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-26 | 60 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.87E-13 | 61 | 103 | No hit | No description |
PROSITE profile | PS51294 | 27.887 | 106 | 160 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-17 | 110 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-15 | 111 | 155 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-24 | 113 | 159 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.27E-13 | 113 | 156 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MQVVTANDGS ANVITSEKRD SDDGEDGVVL IADGSGSGGV GGSSRSSQAN SKKSLDRVKG 60 PWSQEEDAIL GRLVSNFGAR NWSLIARGIP GRSGKSCRLR WCNQLDPAVK RRPFTDEEDS 120 IILQAHAIHG NKWASIARLL PGRTDNAIKN HWNSTLRRRC MESDKFKFDS SQVMEDASAE 180 KSKASSNETL SCGDVNSSKS LDGKDVSSKE KMDDGQHEIS TQTDYQCSSE AGDPPSLFRP 240 VARISAFSVY SSLEVFETSL PSARLAHFEG TLDPVLKSDS GMSKLFQAAY GDQLIPHQCG 300 HCCFASSGTA ESRTSFLGPE FVDYAEPPSF PSHELATLAA DISNVAWCKS GLKNNSVENA 360 ANSVMSSRSH LQIRAPEGSR MYDSLEDRKC RLMGMMTEPV TSP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-41 | 56 | 159 | 4 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00337 | DAP | Transfer from AT3G09230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027065851.1 | 0.0 | transcription factor MYB1-like | ||||
TrEMBL | A0A068UFY2 | 0.0 | A0A068UFY2_COFCA; Uncharacterized protein | ||||
STRING | XP_009783755.1 | 1e-157 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2611 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09230.1 | 4e-89 | myb domain protein 1 |